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Sample GSM5339 Query DataSets for GSM5339
Status Public on Apr 02, 2003
Title S23-P1
Sample type RNA
 
Channel 1
Source name hepatocellular carcinoma
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name non-cancerous liver tissue
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description S23-P1
mAdb experiment ID: 25429
 
Submission date Apr 01, 2003
Last update date Nov 21, 2005
Contact name Xin Wei Wang
E-mail(s) [email protected]
Phone 240-760-6858
Organization name National Cancer Institute
Department Laboratory of Human Carcinogenesis
Lab Liver Carcinogenesis Unit
Street address 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892-4255
Country USA
 
Platform ID GPL257
Series (1)
GSE364 Molecular profiling of human hepatocarcinogenesis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
159762 -0.0777943 1 1 1 1549 497 234 87 2217 602 652 183 0 0.836 -0.0777943
159763 0.2960073 2 1 1 5542 1507 201 82 2940 955 251 81 0 1.977 0.2960073
159764 0.1433273 3 1 1 2642 846 210 83 2005 571 265 89 0 1.391 0.1433273
159765 0.1162763 4 1 1 1168 228 191 71 994 200 250 88 0 1.307 0.1162763
159766 -0.0409593 1 2 1 1134 501 240 93 1608 689 630 158 0 0.910 -0.0409593
159767 0.0538463 2 2 1 1350 355 199 78 1268 329 256 86 0 1.132 0.0538463
159768 0.0856473 3 2 1 1682 536 215 80 1462 415 263 84 0 1.218 0.0856473
159769 -0.0083313 4 2 1 1958 515 193 78 2062 380 272 87 0 0.981 -0.0083313
159770 -0.1938203 1 3 1 1122 550 240 88 1971 643 599 153 0 0.640 -0.1938203
159771 0.3592663 2 3 1 2454 648 202 76 1237 407 257 86 0 2.287 0.3592663
159772 -0.0282603 3 3 1 623 271 203 76 713 266 267 86 0 0.937 -0.0282603
159773 0.1031193 4 3 1 738 165 185 76 695 161 261 89 0 1.268 0.1031193
159774 0.0755473 1 4 1 2487 641 239 111 2487 541 607 141 0 1.190 0.0755473
159775 -0.0675263 2 4 1 1888 513 205 77 2217 537 259 84 0 0.856 -0.0675263
159776 -0.0109953 3 4 1 638 222 205 78 713 193 271 86 0 0.975 -0.0109953
159777 -0.0078893 4 4 1 565 182 183 72 644 160 257 83 0 0.982 -0.0078893
159778 -0.0996333 1 5 1 1059 412 238 93 1644 506 616 154 0 0.795 -0.0996333
159779 0.0090263 2 5 1 1307 433 210 79 1322 438 253 83 0 1.021 0.0090263
159780 0.0240753 3 5 1 1174 462 213 77 1176 385 271 84 0 1.057 0.0240753
159781 -0.0109953 4 5 1 560 263 181 70 638 243 251 78 0 0.975 -0.0109953

Total number of rows: 9128

Table truncated, full table size 664 Kbytes.




Supplementary data files not provided
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