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Sample GSM5337 Query DataSets for GSM5337
Status Public on Apr 02, 2003
Title S21-P1
Sample type RNA
 
Channel 1
Source name hepatocellular carcinoma
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name non-cancerous liver tissue
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description S21-P1
mAdb experiment ID: 25427
 
Submission date Apr 01, 2003
Last update date Nov 21, 2005
Contact name Xin Wei Wang
E-mail(s) [email protected]
Phone 240-760-6858
Organization name National Cancer Institute
Department Laboratory of Human Carcinogenesis
Lab Liver Carcinogenesis Unit
Street address 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892-4255
Country USA
 
Platform ID GPL257
Series (1)
GSE364 Molecular profiling of human hepatocarcinogenesis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
159762 -0.0087743 1 1 1 1519 711 174 103 1376 655 268 85 0 0.980 -0.0087743
159763 0.0681863 2 1 1 2574 592 150 66 1889 600 216 81 0 1.170 0.0681863
159764 0.3328423 3 1 1 4263 1060 160 71 1795 354 255 83 0 2.152 0.3328423
159765 0.1306553 4 1 1 1299 350 163 64 962 236 283 92 0 1.351 0.1306553
159766 0.0606983 1 2 1 1558 1045 155 66 1241 1000 256 83 0 1.150 0.0606983
159767 0.1332193 2 2 1 1993 537 150 63 1318 386 223 78 0 1.359 0.1332193
159768 0.0314083 3 2 1 2889 715 159 83 2294 441 243 88 0 1.075 0.0314083
159769 0.0240753 4 2 1 3277 951 162 65 2663 708 283 89 0 1.057 0.0240753
159770 0.0417873 1 3 1 1998 1360 175 132 1606 1078 269 135 0 1.101 0.0417873
159771 0.1215603 2 3 1 2538 1805 149 132 1676 2006 218 90 0 1.323 0.1215603
159772 -0.0008693 3 3 1 1161 315 159 64 1062 353 251 79 0 0.998 -0.0008693
159773 0.1329003 4 3 1 1716 293 162 65 1196 369 272 94 0 1.358 0.1329003
159774 0.1610683 1 4 1 3070 476 164 113 1883 396 263 107 0 1.449 0.1610683
159775 -0.0872473 2 4 1 2792 758 159 67 2823 600 222 79 0 0.818 -0.0872473
159776 0.0685573 3 4 1 907 416 156 63 779 358 261 86 0 1.171 0.0685573
159777 -0.0496353 4 4 1 663 276 177 69 727 248 287 84 0 0.892 -0.0496353
159778 0.1379873 1 5 1 1139 414 154 67 847 281 268 86 0 1.374 0.1379873
159779 0.0762763 2 5 1 1394 405 162 68 1057 319 222 77 0 1.192 0.0762763
159780 3 5 1 246 205 151 65 347 218 264 87 -50 0.924 -0.0343283
159781 -0.1402613 4 5 1 543 291 160 67 716 336 289 95 0 0.724 -0.1402613

Total number of rows: 9128

Table truncated, full table size 670 Kbytes.




Supplementary data files not provided
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