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Sample GSM5334 Query DataSets for GSM5334
Status Public on Apr 02, 2003
Title S21-M2
Sample type RNA
 
Channel 1
Source name hepatocellular carcinoma
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name non-cancerous liver tissue
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description S21-M2
mAdb experiment ID: 25423
 
Submission date Apr 01, 2003
Last update date Nov 21, 2005
Contact name Xin Wei Wang
E-mail(s) [email protected]
Phone 240-760-6858
Organization name National Cancer Institute
Department Laboratory of Human Carcinogenesis
Lab Liver Carcinogenesis Unit
Street address 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892-4255
Country USA
 
Platform ID GPL257
Series (1)
GSE364 Molecular profiling of human hepatocarcinogenesis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
159762 0.1755123 1 1 1 4448 1830 284 162 2634 1261 384 102 0 1.498 0.1755123
159763 0.0538463 2 1 1 2969 1147 287 7078 2403 917 486 8976 0 1.132 0.0538463
159764 0.3496663 3 1 1 3834 1664 241 443 1761 325 461 138 0 2.237 0.3496663
159765 0.1628633 4 1 1 1096 272 213 87 914 182 423 117 0 1.455 0.1628633
159766 0.3092043 1 2 1 3656 1372 287 105 1704 905 366 407 0 2.038 0.3092043
159767 0.0700383 2 2 1 1887 559 272 170 1583 396 471 259 0 1.175 0.0700383
159768 0.1383033 3 2 1 2674 2408 247 739 1881 322 453 135 0 1.375 0.1383033
159769 0.0128373 4 2 1 2379 423 199 94 2125 416 412 156 0 1.030 0.0128373
159770 0.0629583 1 3 1 1960 1648 275 108 1562 1250 382 105 0 1.156 0.0629583
159771 0.0153603 2 3 1 1930 1036 260 414 1770 880 466 142 0 1.036 0.0153603
159772 0.0025983 3 3 1 828 461 235 1076 938 246 461 327 0 1.006 0.0025983
159773 -0.0013053 4 3 1 978 279 204 91 1019 244 391 112 0 0.997 -0.0013053
159774 0.3051363 1 4 1 3101 598 290 177 1543 271 416 117 0 2.019 0.3051363
159775 -0.1034743 2 4 1 1831 545 259 431 2079 476 465 161 0 0.788 -0.1034743
159776 0.4753813 3 4 1 2045 5849 247 361 947 1129 460 120 0 2.988 0.4753813
159777 -0.0570003 4 4 1 854 423 197 81 1017 335 411 98 0 0.877 -0.0570003
159778 0.0492183 1 5 1 1129 545 310 172 1025 333 433 128 0 1.120 0.0492183
159779 -0.0793553 2 5 1 1643 744 256 200 1807 633 460 164 0 0.833 -0.0793553
159780 0.4634453 3 5 1 2202 3505 244 1550 997 644 452 148 0 2.907 0.4634453
159781 -0.0861863 4 5 1 1305 565 211 95 1484 460 404 101 0 0.820 -0.0861863

Total number of rows: 9128

Table truncated, full table size 672 Kbytes.




Supplementary data files not provided
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