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Sample GSM5329 Query DataSets for GSM5329
Status Public on Apr 02, 2003
Title S19-P1
Sample type RNA
 
Channel 1
Source name hepatocellular carcinoma
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name non-cancerous liver tissue
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description S19-P1
mAdb experiment ID: 25417
 
Submission date Apr 01, 2003
Last update date Nov 21, 2005
Contact name Xin Wei Wang
E-mail(s) [email protected]
Phone 240-760-6858
Organization name National Cancer Institute
Department Laboratory of Human Carcinogenesis
Lab Liver Carcinogenesis Unit
Street address 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892-4255
Country USA
 
Platform ID GPL257
Series (1)
GSE364 Molecular profiling of human hepatocarcinogenesis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
159762 0.1613683 1 1 1 2420 713 190 84 1781 374 472 116 0 1.450 0.1613683
159763 0.2979793 2 1 1 4487 1001 193 82 2337 402 497 120 0 1.986 0.2979793
159764 0.2771513 3 1 1 7852 2363 208 86 3997 1103 560 128 0 1.893 0.2771513
159765 0.0103003 4 1 1 1197 295 200 132 1411 341 582 192 0 1.024 0.0103003
159766 0.1332193 1 2 1 901 289 189 84 922 194 476 113 0 1.359 0.1332193
159767 0.0394143 2 2 1 1493 514 197 128 1514 368 507 190 0 1.095 0.0394143
159768 0.1872393 3 2 1 2682 524 203 83 1927 308 556 131 0 1.539 0.1872393
159769 0.0111473 4 2 1 2182 801 204 94 2206 722 566 139 0 1.026 0.0111473
159770 0.0021663 1 3 1 932 276 207 133 1093 235 479 131 0 1.005 0.0021663
159771 0.1445743 2 3 1 1819 432 201 128 1498 321 511 194 0 1.395 0.1445743
159772 -0.0087743 3 3 1 712 185 189 77 1027 198 573 129 0 0.980 -0.0087743
159773 -0.1700533 4 3 1 769 197 200 81 1276 271 560 128 0 0.676 -0.1700533
159774 0.1616673 1 4 1 3729 1218 212 112 2555 665 492 126 0 1.451 0.1616673
159775 -0.0428723 2 4 1 1686 567 196 74 1911 439 512 120 0 0.906 -0.0428723
159776 0.1202453 3 4 1 1237 399 199 93 1242 249 572 133 0 1.319 0.1202453
159777 -0.0231923 4 4 1 689 228 191 80 1010 203 563 128 0 0.948 -0.0231923
159778 0.0726173 1 5 1 1093 421 201 91 1127 223 485 146 0 1.182 0.0726173
159779 0.0881363 2 5 1 1031 361 199 205 1084 270 506 298 0 1.225 0.0881363
159780 0.1430153 3 5 1 1996 770 198 78 1668 392 567 124 0 1.390 0.1430153
159781 -0.1408623 4 5 1 567 171 178 422 1014 186 556 735 0 0.723 -0.1408623

Total number of rows: 9128

Table truncated, full table size 682 Kbytes.




Supplementary data files not provided
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