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Sample GSM5327 Query DataSets for GSM5327
Status Public on Apr 02, 2003
Title S18-P1
Sample type RNA
 
Channel 1
Source name hepatocellular carcinoma
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name non-cancerous liver tissue
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description S18-P1
mAdb experiment ID: 25415
 
Submission date Apr 01, 2003
Last update date Nov 21, 2005
Contact name Xin Wei Wang
E-mail(s) [email protected]
Phone 240-760-6858
Organization name National Cancer Institute
Department Laboratory of Human Carcinogenesis
Lab Liver Carcinogenesis Unit
Street address 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892-4255
Country USA
 
Platform ID GPL257
Series (1)
GSE364 Molecular profiling of human hepatocarcinogenesis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
159762 -0.0254883 1 1 1 2566 1592 166 131 2683 1486 271 114 0 0.943 -0.0254883
159763 -0.0824943 2 1 1 1904 986 159 957 2309 569 311 605 0 0.827 -0.0824943
159764 0.1795523 3 1 1 2004 529 158 294 1458 283 301 538 0 1.512 0.1795523
159765 0.1367213 4 1 1 1271 370 152 431 1107 290 333 298 0 1.370 0.1367213
159766 -0.0159233 1 2 1 1640 1318 173 127 1714 1253 273 96 0 0.964 -0.0159233
159767 0.0060383 2 2 1 1022 364 165 949 1132 296 331 390 0 1.014 0.0060383
159768 0.0334243 3 2 1 2224 603 144 81 2128 623 304 107 0 1.080 0.0334243
159769 -0.0443123 4 2 1 1503 486 153 76 1737 413 321 97 0 0.903 -0.0443123
159770 -0.0381053 1 3 1 1450 1487 161 89 1628 1338 295 124 0 0.916 -0.0381053
159771 -0.0259493 2 3 1 1103 496 159 90 1256 491 307 108 0 0.942 -0.0259493
159772 -0.0942043 3 3 1 598 280 151 118 839 316 313 114 0 0.805 -0.0942043
159773 -0.0457573 4 3 1 1001 408 159 76 1214 296 328 95 0 0.900 -0.0457573
159774 0.0737183 1 4 1 1941 413 160 127 1703 453 279 104 0 1.185 0.0737183
159775 -0.0296533 2 4 1 1843 474 152 141 2021 401 305 111 0 0.934 -0.0296533
159776 0.0257153 3 4 1 696 331 147 105 832 319 342 121 0 1.061 0.0257153
159777 -0.0535483 4 4 1 575 328 156 74 777 239 328 97 0 0.884 -0.0535483
159778 0.0285713 1 5 1 1080 463 153 634 1109 463 287 232 0 1.068 0.0285713
159779 -0.0324523 2 5 1 963 477 159 81 1147 449 326 97 0 0.928 -0.0324523
159780 -0.2069083 3 5 1 291 284 154 83 541 288 332 150 0 0.621 -0.2069083
159781 0.0867163 4 5 1 775 374 154 77 816 300 334 98 0 1.221 0.0867163

Total number of rows: 9128

Table truncated, full table size 665 Kbytes.




Supplementary data files not provided
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