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Sample GSM5324 Query DataSets for GSM5324
Status Public on Apr 02, 2003
Title S17-M1
Sample type RNA
 
Channel 1
Source name hepatocellular carcinoma
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name non-cancerous liver tissue
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description S17-M1
mAdb experiment ID: 25412
 
Submission date Apr 01, 2003
Last update date Nov 21, 2005
Contact name Xin Wei Wang
E-mail(s) [email protected]
Phone 240-760-6858
Organization name National Cancer Institute
Department Laboratory of Human Carcinogenesis
Lab Liver Carcinogenesis Unit
Street address 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892-4255
Country USA
 
Platform ID GPL257
Series (1)
GSE364 Molecular profiling of human hepatocarcinogenesis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
159762 0.1099163 1 1 1 2753 1142 143 64 2232 842 241 79 0 1.288 0.1099163
159763 0.1290453 2 1 1 4790 1046 132 422 3623 880 222 217 0 1.346 0.1290453
159764 0.2260843 3 1 1 3943 1227 130 57 2446 608 219 154 0 1.683 0.2260843
159765 0.4586383 4 1 1 2626 433 139 59 1087 241 237 78 0 2.875 0.4586383
159766 -0.1487423 1 2 1 539 151 152 78 777 172 241 87 0 0.710 -0.1487423
159767 0.0182843 2 2 1 1283 496 145 61 1291 278 219 75 0 1.043 0.0182843
159768 0.0618293 3 2 1 1499 378 129 56 1385 364 217 68 0 1.153 0.0618293
159769 -0.0793553 4 2 1 2264 709 145 95 2733 553 234 76 0 0.833 -0.0793553
159770 -0.1337133 1 3 1 1436 576 156 65 1961 735 249 2558 0 0.735 -0.1337133
159771 0.1892093 2 3 1 1560 579 138 60 1122 303 218 74 0 1.546 0.1892093
159772 -0.1456943 3 3 1 491 146 131 56 708 175 213 72 0 0.715 -0.1456943
159773 -0.1668533 4 3 1 666 251 154 99 988 252 249 78 0 0.681 -0.1668533
159774 0.2655253 1 4 1 3732 1098 148 161 2160 459 249 3958 0 1.843 0.2655253
159775 -0.1180453 2 4 1 2197 838 144 60 2869 874 221 77 0 0.762 -0.1180453
159776 -0.1325333 3 4 1 501 157 133 57 706 192 215 75 0 0.737 -0.1325333
159777 -0.2232993 4 4 1 450 145 147 69 741 184 243 78 0 0.598 -0.2232993
159778 -0.0061233 1 5 1 1057 300 146 64 1154 248 246 86 0 0.986 -0.0061233
159779 -0.0909793 2 5 1 872 195 132 59 1119 234 222 83 0 0.811 -0.0909793
159780 -0.3160533 3 5 1 671 205 130 56 1308 359 208 71 0 0.483 -0.3160533
159781 -0.2541453 4 5 1 493 183 147 57 858 245 248 94 0 0.557 -0.2541453

Total number of rows: 9128

Table truncated, full table size 671 Kbytes.




Supplementary data files not provided
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