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Sample GSM532 Query DataSets for GSM532
Status Public on Jul 30, 2001
Title 15'+50ug/ml Trp vs 0' in min med +0.2% glu
Sample type RNA
 
Channel 1
Source name 0' in min med +0.2% glu, 25ug total RNA
Organism Escherichia coli
Extracted molecule total RNA
 
Channel 2
Source name 15' in min med +0.2% glu+50ug/ml Trp,25ug total RNA
Organism Escherichia coli
Extracted molecule total RNA
 
 
Description Category: Amino Acid metabolism
Subcategory: Tryptophan
Scanning Software: ScanAlyze
Software version: 2.20
Scanning parameters:
Lot batch = cy_b_2
 
Submission date Jul 30, 2001
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) [email protected]
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL17
Series (1)
GSE7 Tryptophan metabolism response in E. coli

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 128 119 1838 2429 2317 119 112 160 3310 3470 .961 0 .849 1.29 69 70 .793 .555 1.261 1.801 1.172 1158 256 99 117 63 81 .849
2 143 120 1881 2388 2270 163 118 169 3243 3411 .963 0 .786 1.26 69 69 .829 .58 1.207 1.724 1.104 1027 256 99 117 85 103 .786
3 167 140 2095 2453 2289 216 164 234 3270 3504 .952 0 .642 1.199 80 87 .915 .641 1.093 1.561 .928 1027 256 99 117 107 125 .642
4 159 137 3164 3692 3532 193 160 229 5046 5274 0 0 .673 1.137 83 88 .896 .627 1.116 1.595 0 1007 256 99 117 129 147 .673
5 169 140 3614 4216 4051 212 165 236 5787 6023 0 0 .679 1.133 79 84 .892 .624 1.121 1.601 0 1011 256 99 117 149 167 .679
6 150 123 3745 4312 4186 182 126 180 5980 6160 0 0 .675 1.112 76 80 .895 .626 1.118 1.597 0 1055 256 99 117 171 189 .675
7 115 109 8 102 6 106 96 137 9 146 .241 0 .1 .773 11 12 1.333 .933 .75 1.071 .215 1053 256 99 117 194 212 .1
8 109 103 1 89 3 91 86 123 4 127 .081 0 2.1 .8 5 7 .333 .233 3 4.286 .074 1027 256 99 117 216 234 2.1
9 108 103 2 90 2 91 88 126 3 129 .271 0 .515 .889 7 10 1 .7 1 1.429 .284 1027 256 99 117 238 256 .515
10 108 105 7 93 3 93 90 129 4 133 .196 0 -.708 .849 13 8 2.333 1.633 .429 .612 .162 1067 256 99 117 260 278 -.708
11 107 103 12 95 8 92 87 124 11 136 .35 0 -.07 .947 12 13 1.5 1.05 .667 .952 .304 1105 256 99 117 283 301 -.07
12 119 106 7 101 10 107 91 130 14 144 .301 0 1.029 .952 8 11 .7 .49 1.429 2.041 .298 1077 256 99 117 305 323 1.029
13 115 104 12 108 20 104 88 126 29 154 .559 0 1.252 1.167 14 19 .6 .42 1.667 2.381 .542 1041 256 99 117 327 345 1.252
14 105 99 12 89 4 88 85 121 6 127 .165 0 -1.07 .75 14 11 3 2.1 .333 .476 .138 1053 256 99 117 349 367 -1.07
15 112 105 9 95 4 96 91 130 6 136 .377 0 -.655 .765 11 10 2.25 1.575 .444 .635 .299 1053 256 99 117 372 390 -.655
16 113 108 3 96 1 102 95 136 1 137 .288 0 -1.07 .677 10 8 3 2.1 .333 .476 .228 1043 256 99 117 394 412 -1.07
17 112 106 6 106 8 106 98 140 11 151 .426 0 .93 1.163 10 14 .75 .525 1.333 1.905 .498 1091 256 99 117 416 434 .93
18 117 111 31 151 46 115 105 150 66 216 .534 0 1.084 1.255 25 35 .674 .472 1.484 2.12 .641 1234 256 99 117 438 456 1.084
19 147 123 23 140 31 134 109 156 44 200 .617 0 .945 1.134 17 20 .742 .519 1.348 1.925 .799 1043 256 121 139 63 81 .945
20 129 119 103 115 105 150 -3 147 .233 0 .88 8 7 .211 904 256 121 139 85 103

Total number of rows: 4896

Table truncated, full table size 587 Kbytes.




Supplementary data files not provided
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