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Sample GSM531196 Query DataSets for GSM531196
Status Public on Apr 08, 2010
Title Puerto Rican 10
Sample type genomic
 
Source name NYHP
Organism Homo sapiens
Characteristics gender: Male
tissue: Peripheral blood
disease state: Healthy control
Extracted molecule genomic DNA
Extraction protocol Extraction of DNA from peripheral blood at North Shore - Long Island Jewish, following standard Illumina labeling, hybridization, scanning, and genotype protocol. See illumina.com
Label biotin
Label protocol standard Illumina protocol
 
Hybridization protocol Extraction of DNA from peripheral blood at North Shore - Long Island Jewish, following standard Illumina labeling, hybridization, scanning, and genotype protocol. See illumina.com
Scan protocol Extraction of DNA from peripheral blood at North Shore - Long Island Jewish, following standard Illumina labeling, hybridization, scanning, and genotype protocol. See illumina.com
Description sample id: D0010785
Data processing Genotyped using Illumina 610-Quad Genotyping BeadChips, which use the SNPs on the 550-v3 Genotyping BeadChip plus an additional 60,000 SNPs for CNV not analyzed in present study. See illumina.com
 
Submission date Apr 07, 2010
Last update date Apr 07, 2010
Contact name Harry Ostrer
E-mail(s) [email protected]
Phone 212-263-5746
Fax 212-263-3477
Organization name NYU Langone Medical Center
Department Department of Pediatrics
Lab Human Genetics Program
Street address 550 First Avenue, MSB 136
City New York
State/province NY
ZIP/Postal code 10016
Country USA
 
Platform ID GPL8887
Series (1)
GSE21248 Genome-wide Patterns of Population Structure and Admixture among Hispanic/Latino Populations

Data table header descriptions
ID_REF
VALUE Genotype: AA,AB,BB,or NC (no call)
D0010785.Score
D0010785.Theta
D0010785.R
D0010785.B Allele Freq
D0010785.Log R Ratio

Data table
ID_REF VALUE D0010785.Score D0010785.Theta D0010785.R D0010785.B Allele Freq D0010785.Log R Ratio
200003 AB 0.9286734 0.4746231 0.8782089 0.5361649 -0.5379123
200006 BB 0.787675 0.9844202 1.302468 1 -0.2873495
200047 AA 0.8612435 0.04371706 0.3611838 0 -0.5349424
200050 BB 0.8331156 0.9912704 1.231157 0.997489 0.01722946
200052 BB 0.9466458 0.9908507 0.7816871 1 -0.2473236
200053 AA 0.7493879 0.07257222 1.032641 0 -0.0928958
200070 AB 0.9705294 0.5198249 0.3750359 0.521639 -0.4742241
200078 BB 0.6531293 0.9558508 1.678332 1 -0.146153
200087 AB 0.9078211 0.6148915 1.008198 0.5776181 -0.3332686
200091 AB 0.8204677 0.4913286 2.019854 0.4755701 -0.05685099
200096 AB 0.9354096 0.4607385 1.004708 0.5070752 -0.3054026
200124 AA 0.8902165 0.02474347 0.5747848 0 -0.392671
200199 BB 0.9598788 1 0.7853228 1 0.1717917
200240 AA 0.8782917 0.02519296 1.208079 0 -0.1522505
200251 AB 0.9409742 0.5616479 1.089632 0.5267982 -0.2245204
200258 AA 0.7451698 0.04547281 1.255941 0 -0.4115473
200260 BB 0.7948331 1 1.136773 1 -0.1745882
200261 AB 0.8794336 0.5458794 1.193797 0.4939275 -0.2982658
200262 BB 0.9256892 0.9755375 0.5076796 0.9987144 -0.2515668
200519 AA 0.8716854 0.001092744 1.548387 0 -0.1125018

Total number of rows: 620901

Table truncated, full table size 36062 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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