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Sample GSM531160 Query DataSets for GSM531160
Status Public on Apr 08, 2010
Title Dominican 21
Sample type genomic
 
Source name NYHP
Organism Homo sapiens
Characteristics gender: Male
tissue: Peripheral blood
disease state: Healthy control
Extracted molecule genomic DNA
Extraction protocol Extraction of DNA from peripheral blood at North Shore - Long Island Jewish, following standard Illumina labeling, hybridization, scanning, and genotype protocol. See illumina.com
Label biotin
Label protocol standard Illumina protocol
 
Hybridization protocol Extraction of DNA from peripheral blood at North Shore - Long Island Jewish, following standard Illumina labeling, hybridization, scanning, and genotype protocol. See illumina.com
Scan protocol Extraction of DNA from peripheral blood at North Shore - Long Island Jewish, following standard Illumina labeling, hybridization, scanning, and genotype protocol. See illumina.com
Description sample id: D0011098
Data processing Genotyped using Illumina 610-Quad Genotyping BeadChips, which use the SNPs on the 550-v3 Genotyping BeadChip plus an additional 60,000 SNPs for CNV not analyzed in present study. See illumina.com
 
Submission date Apr 07, 2010
Last update date Apr 07, 2010
Contact name Harry Ostrer
E-mail(s) [email protected]
Phone 212-263-5746
Fax 212-263-3477
Organization name NYU Langone Medical Center
Department Department of Pediatrics
Lab Human Genetics Program
Street address 550 First Avenue, MSB 136
City New York
State/province NY
ZIP/Postal code 10016
Country USA
 
Platform ID GPL8887
Series (1)
GSE21248 Genome-wide Patterns of Population Structure and Admixture among Hispanic/Latino Populations

Data table header descriptions
ID_REF
VALUE Genotype: AA,AB,BB,or NC (no call)
D0011098.Score
D0011098.Theta
D0011098.R
D0011098.B Allele Freq
D0011098.Log R Ratio

Data table
ID_REF VALUE D0011098.Score D0011098.Theta D0011098.R D0011098.B Allele Freq D0011098.Log R Ratio
200003 AB 0.9299463 0.4380623 1.165377 0.501818 -0.1567924
200006 AB 0.787675 0.4611563 1.824637 0.5050391 -0.2574286
200047 AA 0.8612435 0.05171773 0.4468781 0.003310176 -0.2238033
200050 BB 0.8331156 0.9881294 1.248846 0.9946348 0.03332234
200052 BB 0.9466458 0.9935277 0.8955948 1 -0.04954137
200053 AA 0.7493879 0.08711226 1.101997 0.006839502 -0.00528308
200070 AA 0.9705294 0.01001354 0.4578608 0.007937361 -0.08368907
200078 BB 0.6531293 0.9409769 1.741887 1 -0.1078972
200087 AB 0.9078211 0.5743181 1.046786 0.5303005 -0.3025894
200091 AA 0.8204677 0.02137272 1.588022 0.0005219482 -0.04304856
200096 BB 0.9354096 0.9531382 0.8199971 0.9961249 -0.2340875
200124 BB 0.8902165 0.972938 0.9686785 1 0.08341083
200199 AB 0.9598788 0.4892274 0.8028973 0.5047318 -0.0679583
200240 AA 0.8782917 0.03750252 1.343549 0.01168974 -0.006299096
200251 AB 0.9409742 0.5139279 1.340634 0.4774317 0.07538073
200258 AA 0.7451698 0.03580184 1.398377 0 -0.2496612
200260 BB 0.7948331 1 1.232344 1 -0.05812762
200261 BB 0.8794336 0.9765989 1.192035 1 -0.005044202
200262 AA 0.9256892 0.01567282 0.7061795 0.002063424 0.1269384
200519 AB 0.8716854 0.4833123 2.073082 0.4918251 -0.05951344

Total number of rows: 620901

Table truncated, full table size 36358 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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