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Sample GSM531127 Query DataSets for GSM531127
Status Public on Apr 08, 2010
Title Colombian 14
Sample type genomic
 
Source name NYHP
Organism Homo sapiens
Characteristics gender: Male
tissue: Peripheral blood
disease state: Healthy control
Extracted molecule genomic DNA
Extraction protocol Extraction of DNA from peripheral blood at North Shore - Long Island Jewish, following standard Illumina labeling, hybridization, scanning, and genotype protocol. See illumina.com
Label biotin
Label protocol standard Illumina protocol
 
Hybridization protocol Extraction of DNA from peripheral blood at North Shore - Long Island Jewish, following standard Illumina labeling, hybridization, scanning, and genotype protocol. See illumina.com
Scan protocol Extraction of DNA from peripheral blood at North Shore - Long Island Jewish, following standard Illumina labeling, hybridization, scanning, and genotype protocol. See illumina.com
Description sample id: D0013175
Data processing Genotyped using Illumina 610-Quad Genotyping BeadChips, which use the SNPs on the 550-v3 Genotyping BeadChip plus an additional 60,000 SNPs for CNV not analyzed in present study. See illumina.com
 
Submission date Apr 07, 2010
Last update date Apr 07, 2010
Contact name Harry Ostrer
E-mail(s) [email protected]
Phone 212-263-5746
Fax 212-263-3477
Organization name NYU Langone Medical Center
Department Department of Pediatrics
Lab Human Genetics Program
Street address 550 First Avenue, MSB 136
City New York
State/province NY
ZIP/Postal code 10016
Country USA
 
Platform ID GPL8887
Series (1)
GSE21248 Genome-wide Patterns of Population Structure and Admixture among Hispanic/Latino Populations

Data table header descriptions
ID_REF
VALUE Genotype: AA,AB,BB,or NC (no call)
D0013175.Score
D0013175.Theta
D0013175.R
D0013175.B Allele Freq
D0013175.Log R Ratio

Data table
ID_REF VALUE D0013175.Score D0013175.Theta D0013175.R D0013175.B Allele Freq D0013175.Log R Ratio
200003 AB 0.9299463 0.3586551 2.367835 0.4053305 0.9030992
200006 AB 0.7557607 0.4218678 4.268 0.4581243 0.9842518
200047 AA 0.8612435 0.04567681 0.8606949 0 0.718803
200050 BB 0.8331156 1 0.8555484 1 -0.4953181
200052 BB 0.9466458 0.9898216 1.610316 1 0.7947703
200053 AA 0.7493879 0.06726622 1.812155 0 0.7207296
200070 AA 0.9705294 0.01041484 0.4562863 0.008341825 -0.08875039
200078 AB 0.6531293 0.5433544 4.022415 0.519231 0.7397134
200087 AA 0.9078211 0.02771533 1.972322 0 0.9418482
200091 AB 0.8204677 0.4660598 2.580658 0.4500275 0.3139051
200096 BB 0.9354096 0.9645522 1.424214 1 0.5720291
200124 BB 0.8902165 0.9723818 1.44275 1 0.6579176
200199 AA 0.9598788 0.01942503 0.9229267 0.01589105 0.3211296
200240 AB 0.8782917 0.4799448 2.225428 0.5226362 0.5138573
200251 AA 0.9409742 0.01391601 0.8246972 0.001757747 -0.2711926
200258 NC 0.02001185 0.02951882 3.848074 0 1.215224
200260 BB 0.7948331 1 2.09614 1 0.7082025
200261 AA 0.8794336 0.0407177 2.046373 0 0.7962431
200262 AB 0.9208583 0.4496348 0.295059 0.4905356 -1.318371
200519 AB 0.8716854 0.4834778 3.896231 0.4919962 0.850677

Total number of rows: 620901

Table truncated, full table size 36203 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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