NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM531126 Query DataSets for GSM531126
Status Public on Apr 08, 2010
Title Colombian 13
Sample type genomic
 
Source name NYHP
Organism Homo sapiens
Characteristics gender: Male
tissue: Peripheral blood
disease state: Healthy control
Extracted molecule genomic DNA
Extraction protocol Extraction of DNA from peripheral blood at North Shore - Long Island Jewish, following standard Illumina labeling, hybridization, scanning, and genotype protocol. See illumina.com
Label biotin
Label protocol standard Illumina protocol
 
Hybridization protocol Extraction of DNA from peripheral blood at North Shore - Long Island Jewish, following standard Illumina labeling, hybridization, scanning, and genotype protocol. See illumina.com
Scan protocol Extraction of DNA from peripheral blood at North Shore - Long Island Jewish, following standard Illumina labeling, hybridization, scanning, and genotype protocol. See illumina.com
Description sample id: D0012551
Data processing Genotyped using Illumina 610-Quad Genotyping BeadChips, which use the SNPs on the 550-v3 Genotyping BeadChip plus an additional 60,000 SNPs for CNV not analyzed in present study. See illumina.com
 
Submission date Apr 07, 2010
Last update date Apr 07, 2010
Contact name Harry Ostrer
E-mail(s) [email protected]
Phone 212-263-5746
Fax 212-263-3477
Organization name NYU Langone Medical Center
Department Department of Pediatrics
Lab Human Genetics Program
Street address 550 First Avenue, MSB 136
City New York
State/province NY
ZIP/Postal code 10016
Country USA
 
Platform ID GPL8887
Series (1)
GSE21248 Genome-wide Patterns of Population Structure and Admixture among Hispanic/Latino Populations

Data table header descriptions
ID_REF
VALUE Genotype: AA,AB,BB,or NC (no call)
D0012551.Score
D0012551.Theta
D0012551.R
D0012551.B Allele Freq
D0012551.Log R Ratio

Data table
ID_REF VALUE D0012551.Score D0012551.Theta D0012551.R D0012551.B Allele Freq D0012551.Log R Ratio
200003 AB 0.9299463 0.3998701 1.114053 0.4556946 -0.2052813
200006 AB 0.787675 0.4630212 2.036543 0.5068188 -0.09752073
200047 AA 0.8612435 0.03473616 0.4348809 0 -0.2715219
200050 BB 0.8331156 0.9986817 1.332715 1 0.1422272
200052 BB 0.9466458 0.98969 0.8718932 1 -0.09042531
200053 AA 0.7493879 0.09013849 1.127641 0.01094384 0.02662306
200070 AB 0.9705294 0.5467058 0.4688374 0.5485618 -0.1461437
200078 AB 0.6531293 0.5146805 2.151228 0.4869639 -0.1634438
200087 AA 0.9078211 0.05025218 0.8613928 0.01177131 -0.2700975
200091 AB 0.8204677 0.5249296 1.885414 0.5104241 -0.1651074
200096 BB 0.9354096 0.9615287 0.7830654 1 -0.2934922
200124 AB 0.8902165 0.6313253 1.082381 0.5169399 0.1118003
200199 BB 0.9598788 1 0.7048435 1 0.01580908
200240 AA 0.8782917 0.03325274 1.341154 0.006723742 -0.00632872
200251 AA 0.9409742 0.006747944 0.9788006 0 -0.01827151
200258 AA 0.7451698 0.03315591 1.565457 0 -0.08493605
200260 BB 0.7948331 0.9996502 1.157394 1 -0.1485146
200261 AA 0.8794336 0.05411175 1.116681 0 -0.08697822
200262 BB 0.9256892 0.9862223 0.5585664 1 -0.1071783
200519 AA 0.8716854 0.006406153 1.799481 0 0.09970111

Total number of rows: 620901

Table truncated, full table size 35966 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap