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Sample GSM5299 Query DataSets for GSM5299
Status Public on Apr 18, 2003
Title 0.2ug/mL MMC:ctrl (4h)_2
Sample type RNA
 
Channel 1
Source name MMC
Organism Mycobacterium tuberculosis
Extracted molecule total RNA
 
Channel 2
Source name control
Organism Mycobacterium tuberculosis
Extracted molecule total RNA
 
 
Description H37Rv treated for 4h with 0.2ug/mL MMC in 7H9/ADC/Tween at OD650 = 0.3 versus control untreated cells
Sample_array_print_batch: Mtaa-05
Sample_image_analysis_software: Axon GenePix Pro
Sample_image_analysis_software_version: 3.0.6.66
Sample_microarray_scanner: GenePix 4000B [82425]
Sample_NIH_mAdb_system_expt_id: 24078
Sample_organism_strain: H37Rv
Sample_treatment_agent: MMC
Sample_treatment_dose: 0.2
Sample_treatment_dose_unit: microgram/ml
Sample_treatment_timepoint: 4
Sample_treatment_timepoint_unit: h
Sample_treatment_vehicle: DMF (1/10000 dilution )
Keywords = DNA damage
 
Submission date Apr 01, 2003
Last update date Nov 21, 2005
Contact name Helena I Boshoff
E-mail(s) [email protected]
Phone 301-451-9438
Fax 301-402-0993
Organization name NIAID/ NIH
Department LIG
Lab Tuberculosis Research Section
Street address 12441 Parklawn Drive
City Rockville
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL280
Series (1)
GSE365 DNA repair in Mycobacterium tuberculosis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
1010081 -0.1530453 6 1 1 429 144 146 43 431 142 88 14 0 0.703 -0.1530453
1010082 -0.0925893 8 1 1 904 342 236 62 847 357 143 21 0 0.808 -0.0925893
1010083 -0.1272613 6 2 1 603 187 148 44 607 192 88 14 0 0.746 -0.1272613
1010084 0.0170333 8 2 1 610 304 224 60 460 585 144 24 0 1.040 0.0170333
1010085 -0.1493543 6 3 1 957 314 146 57 1061 360 87 15 0 0.709 -0.1493543
1010086 -0.0004353 8 3 1 1116 408 247 63 890 339 149 26 0 0.999 -0.0004353
1010087 0.1914513 6 4 1 1225 375 148 46 678 196 88 16 0 1.554 0.1914513
1010088 0.0902583 8 4 1 2349 881 252 64 1604 608 154 27 0 1.231 0.0902583
1010089 0.1886473 6 5 1 449 126 157 50 252 60 91 18 0 1.544 0.1886473
1010090 0.0457143 8 5 1 903 327 257 68 653 252 158 26 0 1.111 0.0457143
1010091 -0.0746883 6 6 1 589 163 160 46 526 140 92 16 0 0.842 -0.0746883
1010092 0.2723063 8 6 1 756 263 270 66 378 112 157 23 0 1.872 0.2723063
1010093 0.2187983 14 1 1 418 146 142 46 227 72 85 14 0 1.655 0.2187983
1010094 -0.0074463 16 1 1 579 136 176 51 447 101 98 20 0 0.983 -0.0074463
1010095 0.0538463 14 2 1 443 146 144 43 309 95 84 14 0 1.132 0.0538463
1010096 -0.0404823 16 2 1 1046 230 180 53 908 209 99 18 0 0.911 -0.0404823
1010097 0.0480533 14 3 1 372 114 145 42 257 69 84 14 0 1.117 0.0480533
1010098 -0.1726313 16 3 1 7275 1886 181 54 9085 2613 102 78 0 0.672 -0.1726313
1010099 -0.1630433 14 4 1 1059 360 147 44 1215 424 84 14 0 0.687 -0.1630433
1010100 -0.5767543 16 4 1 17235 3542 187 57 54935 13620 108 201 0 0.265 -0.5767543

Total number of rows: 4320

Table truncated, full table size 314 Kbytes.




Supplementary data files not provided
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