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Sample GSM5288 Query DataSets for GSM5288
Status Public on Apr 18, 2003
Title 25mJ/cm2 UV:ctrl (4h)
Sample type RNA
 
Channel 1
Source name UV
Organism Mycobacterium tuberculosis
Extracted molecule total RNA
 
Channel 2
Source name control
Organism Mycobacterium tuberculosis
Extracted molecule total RNA
 
 
Description H37Rv irradiated with UV at 25 mJ/cm2 in open Petri dish (2E+10 cells in 5mL 7H9/ADC/Tween) with 4h recovery in 50mL 7H9/ADC/Tween at 37C versus control unirradiated cells
Sample_array_print_batch: Mtaa-05
Sample_image_analysis_software: Axon GenePix Pro
Sample_image_analysis_software_version: 3.0.6.66
Sample_microarray_scanner: GenePix 4000B [82425]
Sample_NIH_mAdb_system_expt_id: 24091
Sample_organism_strain: H37Rv
Sample_treatment_agent: UV radiation
Sample_treatment_dose: 25
Sample_treatment_dose_unit: mJ/cm2
Sample_treatment_timepoint: 4
Sample_treatment_timepoint_unit: h
Sample_treatment_vehicle: None
Keywords = DNA damage
 
Submission date Mar 31, 2003
Last update date Nov 21, 2005
Contact name Helena I Boshoff
E-mail(s) [email protected]
Phone 301-451-9438
Fax 301-402-0993
Organization name NIAID/ NIH
Department LIG
Lab Tuberculosis Research Section
Street address 12441 Parklawn Drive
City Rockville
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL280
Series (1)
GSE365 DNA repair in Mycobacterium tuberculosis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
1010081 -0.1348963 6 1 1 723 215 178 51 1031 329 101 16 0 0.733 -0.1348963
1010082 -0.3904063 8 1 1 743 235 261 62 1647 598 167 23 0 0.407 -0.3904063
1010083 0.0648323 6 2 1 1018 359 184 51 999 363 101 16 0 1.161 0.0648323
1010084 -0.1366773 8 2 1 892 281 250 62 1261 460 161 22 0 0.730 -0.1366773
1010085 0.1442633 6 3 1 1010 369 184 53 840 319 99 16 0 1.394 0.1442633
1010086 0.0773683 8 3 1 1619 528 252 65 1587 539 157 21 0 1.195 0.0773683
1010087 0.0406023 6 4 1 1332 643 185 54 1406 687 100 16 0 1.098 0.0406023
1010088 0.0835033 8 4 1 2107 736 251 62 2071 750 156 21 0 1.212 0.0835033
1010089 -0.1209043 6 5 1 686 206 189 55 922 304 101 16 0 0.757 -0.1209043
1010090 -0.1129463 8 5 1 885 354 249 63 1192 514 161 23 0 0.771 -0.1129463
1010091 0.1778253 6 6 1 1092 316 189 54 854 248 104 17 0 1.506 0.1778253
1010092 0.0937723 8 6 1 905 277 244 63 827 249 161 25 0 1.241 0.0937723
1010093 -0.0008693 14 1 1 889 307 189 54 977 366 100 17 0 0.998 -0.0008693
1010094 0.1815583 16 1 1 456 124 162 47 321 81 79 13 0 1.519 0.1815583
1010095 -0.0510983 14 2 1 888 321 191 55 1079 405 99 16 0 0.889 -0.0510983
1010096 -0.1319443 16 2 1 899 237 164 49 1326 320 81 13 0 0.738 -0.1319443
1010097 -0.2262143 14 3 1 569 179 191 53 895 288 99 16 0 0.594 -0.2262143
1010098 0.3773063 16 3 1 4494 1582 173 52 2351 815 85 25 0 2.384 0.3773063
1010099 -0.1023733 14 4 1 1567 500 194 56 2272 711 100 18 0 0.790 -0.1023733
1010100 0.4204513 16 4 1 42570 12050 178 254 20220 6586 89 437 0 2.633 0.4204513

Total number of rows: 4320

Table truncated, full table size 317 Kbytes.




Supplementary data files not provided
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