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Sample GSM5276 Query DataSets for GSM5276
Status Public on Apr 18, 2003
Title 40mJ/cm2 UV:ctrl (6h)
Sample type RNA
 
Channel 1
Source name UV
Organism Mycobacterium tuberculosis
Extracted molecule total RNA
 
Channel 2
Source name control
Organism Mycobacterium tuberculosis
Extracted molecule total RNA
 
 
Description H37Rv irradiated with UV at 40 mJ/cm2 in open Petri dish (2E+10 cells in 5mL 7H9/ADC/Tween) with 6h recovery in 50mL 7H9/ADC/Tween at 37C versus control unirradiated cells
Sample_array_print_batch: Mtaa-04
Sample_image_analysis_software: Axon GenePix Pro
Sample_image_analysis_software_version: 3.0.6.73
Sample_microarray_scanner: GenePix 4000A [55478]
Sample_NIH_mAdb_system_expt_id: 25440
Sample_organism_strain: H37Rv
Sample_treatment_agent: UV radiation
Sample_treatment_dose: 40
Sample_treatment_dose_unit: mJ/cm2
Sample_treatment_timepoint: 6
Sample_treatment_timepoint_unit: h
Sample_treatment_vehicle: None
Keywords = DNA damage
 
Submission date Mar 31, 2003
Last update date Nov 21, 2005
Contact name Helena I Boshoff
E-mail(s) [email protected]
Phone 301-451-9438
Fax 301-402-0993
Organization name NIAID/ NIH
Department LIG
Lab Tuberculosis Research Section
Street address 12441 Parklawn Drive
City Rockville
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL280
Series (1)
GSE365 DNA repair in Mycobacterium tuberculosis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
1010081 -0.1758743 6 1 1 220 79 79 29 277 79 57 20 0 0.667 -0.1758743
1010082 -0.1444813 8 1 1 262 92 85 42 318 110 61 17 0 0.717 -0.1444813
1010083 -0.0123343 6 2 1 277 104 80 29 270 95 59 19 0 0.972 -0.0123343
1010084 0.0073213 8 2 1 261 98 85 30 239 78 59 16 0 1.017 0.0073213
1010085 0.0976043 6 3 1 419 143 81 28 339 112 58 18 0 1.252 0.0976043
1010086 0.0191163 8 3 1 789 286 84 28 760 292 58 17 0 1.045 0.0191163
1010087 0.1708483 6 4 1 753 236 82 27 528 156 57 17 0 1.482 0.1708483
1010088 0.1583623 8 4 1 1217 435 77 28 881 331 57 17 0 1.440 0.1583623
1010089 -0.0127813 6 5 1 177 70 80 27 160 44 56 16 0 0.971 -0.0127813
1010090 0.0852913 8 5 1 446 173 80 28 369 140 56 16 0 1.217 0.0852913
1010091 0.4079013 6 6 1 493 177 80 29 224 69 56 17 0 2.558 0.4079013
1010092 0.2062863 8 6 1 286 125 82 28 189 60 57 16 0 1.608 0.2062863
1010093 0.6035773 14 1 1 292 144 76 29 109 32 53 15 0 4.014 0.6035773
1010094 0.0492183 16 1 1 177 61 78 30 144 34 52 15 0 1.120 0.0492183
1010095 0.0762763 14 2 1 145 51 74 26 114 36 52 15 0 1.192 0.0762763
1010096 -0.0777943 16 2 1 357 108 75 29 402 106 51 15 0 0.836 -0.0777943
1010097 -0.0305843 14 3 1 149 57 72 27 139 44 53 16 0 0.932 -0.0305843
1010098 -0.1636763 16 3 1 1511 810 78 32 2227 1246 53 17 0 0.686 -0.1636763
1010099 -0.0092173 14 4 1 405 179 73 28 406 165 53 15 0 0.979 -0.0092173
1010100 -0.2644013 16 4 1 23411 9408 82 35 44689 13245 53 16 0 0.544 -0.2644013

Total number of rows: 4320

Table truncated, full table size 302 Kbytes.




Supplementary data files not provided
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