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GEO accession:
Sample GSM525371
Query DataSets for GSM525371
Status
Public on Oct 01, 2010
Title
CLL cells LN patient #13
Sample type
RNA
Source name
LN derived CLL cells
Organism
Homo sapiens
Characteristics
cell type: CLL
origin: Lymph node
patient: patient #13
Extracted molecule
total RNA
Extraction protocol
Total RNA was extracted using Qiagen RNA extraction kit
Label
biotin
Label protocol
Biotin labeled with Affymetrix's IVT labeling kits (Affymetrix, Santa Clara, CA).
Hybridization protocol
Fragmented RNA was assessed for relative length on Agilent 2100 bioanalyzer and hybridized to Affymetrix HG-U133 Plus 2.0 chips for 16 hours.
Scan protocol
Affymetrix GeneChip scanner
Description
primary CLL cells
Data processing
Intensities were pre-processed with MAS5.0, and further processed with variance stablization transformation
Submission date
Mar 23, 2010
Last update date
Oct 01, 2010
Contact name
Adrian Wiestner
E-mail(s)
[email protected]
Phone
301-594-6855
Organization name
NHLBI/NIH
Department
Hematology Branch
Street address
10 Center Dr
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL570
Series (1)
GSE21029
The lymph node microenvironment promotes B-cell receptor signaling, NF-κB activation, and tumor proliferation in chronic lymphocytic leukemia (CLL)
Data table header descriptions
ID_REF
VALUE
S10 transformed data.
Data table
ID_REF
VALUE
1007_s_at
1.06917189
1053_at
1.51220517
117_at
1.31005037
121_at
1.2341984
1255_g_at
0.49943053
1294_at
1.75596752
1316_at
0.84625019
1320_at
0.30492908
1405_i_at
0.97631371
1431_at
0.61588904
1438_at
0.42218591
1487_at
1.42963097
1494_f_at
0.78744919
1552256_a_at
1.00101063
1552257_a_at
1.57846291
1552258_at
0.37209293
1552261_at
0.50468763
1552263_at
1.67311584
1552264_a_at
1.65626805
1552266_at
0.55740946
Total number of rows:
54675
Table truncated, full table size
1158 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM525371.CEL.gz
4.7 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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