NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM522273 Query DataSets for GSM522273
Status Public on Apr 19, 2010
Title Stage I colorectal cancer tissue samples (Frozen) 50_Cy3
Sample type genomic
 
Source name stageI_CRC_frozen
Organism Homo sapiens
Characteristics disease state: colorectal cancer stage 1
tissue: tumor
Extracted molecule genomic DNA
Extraction protocol Wizard® Genomic DNA Purification Kit (Promega, Benelux, Leiden, The Netherlands)
Label Cy3
Label protocol Sample_label_protocol_ch1 = DNA labeling protocol according to Enzo Life Sciences
 
Hybridization protocol Hybridization protocol available via www.agilent.com
Scan protocol Slides were scanned using the Agilent microarray scanner, protocol according to Agilent.
Description protocols according to manufacturer (Enzo Life Sciences)
Data processing Median Signal intensity minus median Background intensity; excluding negative values
 
Submission date Mar 15, 2010
Last update date Apr 19, 2010
Contact name Daoud Sie
E-mail(s) [email protected]
Phone +31 20 4442428
Organization name Vrije Universiteit Medical Center
Department Pathology
Lab Microarray Core Facility
Street address De Boelelaan 1117
City Amsterdam
ZIP/Postal code 1081 HV
Country Netherlands
 
Platform ID GPL8693
Series (1)
GSE17047 Candidate driver genes in focal chromosomal aberrations of stage II colon cancer

Data table header descriptions
ID_REF
gMedianSignal median signal intensity channel 1
gBGMedianSignal background median intensity channel 1
VALUE median signal intensity channel 1 minus background median intensity channel 1, excluding negative values

Data table
ID_REF gMedianSignal gBGMedianSignal VALUE
4 253 43.5 209.5
5 175 44 131
6 339 44 295
7 246 44 202
8 225 44 181
9 194 44 150
10 133 43 90
11 195 43 152
12 176 43 133
13 176.5 44 132.5
14 276 44 232
15 503 43 460
16 255 44 211
17 274 44 230
18 461 43.5 417.5
20 375 43 332
22 262 44 218
23 350 43 307
24 181 43 138
25 313 43 270

Total number of rows: 100259

Table truncated, full table size 1813 Kbytes.




Supplementary file Size Download File type/resource
GSM522273_GSM522309_fresh_tumor_vs_poolXX.txt.gz 435.8 Kb (ftp)(http) TXT
GSM522273_MAF_251901511427_S01_CGH_v4_95_Feb07_1_2.txt.gz 32.0 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap