NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM513245 Query DataSets for GSM513245
Status Public on Jun 10, 2010
Title Tumor_9806
Sample type RNA
 
Source name Human breast tumor
Organism Homo sapiens
Characteristics disease state: Human breast tumor
Extracted molecule total RNA
Extraction protocol Total RNA was extracted with RNeasy Lipid Tissue Mini Kit according to the manufacturer’s instructions. Quality control was performed with Agilent Bioanalyzer.
Label biotin
Label protocol Standard Illumina labeling protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Tumor_9806
Data processing The data were normalized using quantile normalization with BASE
 
Submission date Feb 22, 2010
Last update date Jun 09, 2010
Contact name Toshima Z. Parris
E-mail(s) [email protected]
Organization name University of Gothenburg
Department Department of Oncology
Lab Sahlgrenska Cancer Center
Street address Medicinaregatan 1G, 6th floor
City Gothenburg
ZIP/Postal code 41390
Country Sweden
 
Platform ID GPL6947
Series (2)
GSE20462 Clinical implications of gene dosage and gene expression patterns in diploid breast carcinoma (transcriptomic profiling)
GSE20486 Clinical implications of gene dosage and gene expression patterns in diploid breast carcinoma

Data table header descriptions
ID_REF
VALUE quantile normalized

Data table
ID_REF VALUE
ILMN_1725881 35.041237
ILMN_1910180 35.041237
ILMN_1804174 29.845362
ILMN_1796063 950.42267
ILMN_1811966 27.85567
ILMN_1668162 23.28866
ILMN_1715600 29.845362
ILMN_1912287 35.051548
ILMN_1793729 63.42268
ILMN_1889125 27.85567
ILMN_2296644 23.28866
ILMN_1711283 23.28866
ILMN_1682799 68.91753
ILMN_1909767 23.28866
ILMN_1840770 24.71134
ILMN_1906209 27.85567
ILMN_1665311 66.09278
ILMN_1657235 23.28866
ILMN_1655444 1024.7113
ILMN_1679194 1062.2474

Total number of rows: 48803

Table truncated, full table size 1080 Kbytes.




Supplementary file Size Download File type/resource
GSM513245.csv.gz 253.0 Kb (ftp)(http) CSV
GSM513245_4674281011_H_Grn.idat.gz 2.3 Mb (ftp)(http) IDAT
Processed data are available on Series record
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap