|
| Status |
Public on Apr 05, 2021 |
| Title |
TMMp Smart-seq2 Pool 2 Cell 161 |
| Sample type |
SRA |
| |
|
| Source name |
aerial tissue
|
| Organism |
Arabidopsis thaliana |
| Characteristics |
developmental stage: 10 days post-germination
transgene: TMMp::TMM-YFP
pool: pool 2
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Smart-seq2 chemistry, miniaturized Nextera XT protocol
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
| |
|
| Description |
H21-D2-Camila-TMM5-GCTCATGA-TCTTACGC_S189_R1_001
|
| Data processing |
Data processing steps and methods used are included in the manuscript. Otherwise, note that the raw data for the "ATML1p 10X Genomics pool 1" sample were re-generated using bamtofastq (https://support.10xgenomics.com/docs/bamtofastq).
Genome_build: TAIR10
Supplementary_files_format_and_content: Processed files include compiled TPM values and FACS outputs for Smart-seq2 scRNA-seq datasets. Cell Ranger outputs are included for the 10X Genomics datasets.
|
| |
|
| Submission date |
Feb 19, 2021 |
| Last update date |
Apr 05, 2021 |
| Contact name |
Dominique Bergmann |
| Organization name |
Stanford University
|
| Street address |
371 Jane Stanford Way
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5020 |
| Country |
USA |
| |
|
| Platform ID |
GPL19580 |
| Series (1) |
| GSE167135 |
Single-Cell Resolution of Lineage Trajectories in the Arabidopsis Stomatal Lineage and Developing Leaf |
|
| Relations |
| BioSample |
SAMN18010899 |
| SRA |
SRX10136235 |
