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Sample GSM509767 Query DataSets for GSM509767
Status Public on Jun 30, 2011
Title Vac__baseline_rep09
Sample type RNA
 
Source name Vaccine_baseline_rep09
Organism Homo sapiens
Characteristics tissue: Paxgene Whole Blood RNA Samples
Treatment protocol Whole blood samples collected using PAXgene RNA tubes and stored at -20 degrees Celcius until processing
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene RNA
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion TotalPrep RNA Amplification Kit kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 4950679036_E
Data processing Data was normalised using cubic spline algorithm in Illumina BeadStudio V2.0
 
Submission date Feb 16, 2010
Last update date Jun 30, 2011
Contact name Grant Parnell
E-mail(s) [email protected]
Organization name University of Sydney
Department Nepean Clinical School
Lab Intensive Care
Street address Nepean Hospital
City Kingswood
State/province NSW
ZIP/Postal code 2747
Country Australia
 
Platform ID GPL6947
Series (1)
GSE20346 Expression profiling of critically ill influenza and bacterial pneumonia patients, also influenza vaccination recipients

Data table header descriptions
ID_REF
VALUE cubic spline normalised intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 -5.326228 0.7193676
ILMN_1736007 7.400638 0.2109504
ILMN_2383229 -3.066238 0.7489106
ILMN_1671474 10.6149 0.04999297
ILMN_1772582 -5.001839 0.7022398
ILMN_1735698 0.295099 0.4492754
ILMN_1653355 12.67405 0.03009507
ILMN_1787689 2.252562 0.2982543
ILMN_1745607 0.8338453 0.4242424
ILMN_2136495 -4.092209 0.6640316
ILMN_1668111 -9.453798 0.9343625
ILMN_1735045 -9.123628 0.8787879
ILMN_1680754 11.73748 0.1146245
ILMN_2375184 -4.087423 0.8610045
ILMN_1755321 29.44581 0.001317523
ILMN_1698554 26.68355 0.001317523
ILMN_1814092 17.15431 0.03557312
ILMN_1760414 -3.950875 0.657444
ILMN_2061446 39.20132 8.68E-07
ILMN_1752884 15.98098 0.04347826

Total number of rows: 37804

Table truncated, full table size 1147 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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