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Sample GSM509762 Query DataSets for GSM509762
Status Public on Jun 30, 2011
Title Vac__day 7_rep06
Sample type RNA
 
Source name Vaccine_day 7_rep06
Organism Homo sapiens
Characteristics tissue: Paxgene Whole Blood RNA Samples
Treatment protocol Whole blood samples collected using PAXgene RNA tubes and stored at -20 degrees Celcius until processing
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene RNA
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion TotalPrep RNA Amplification Kit kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 4950679008_L
Data processing Data was normalised using cubic spline algorithm in Illumina BeadStudio V2.0
 
Submission date Feb 16, 2010
Last update date Jun 30, 2011
Contact name Grant Parnell
E-mail(s) [email protected]
Organization name University of Sydney
Department Nepean Clinical School
Lab Intensive Care
Street address Nepean Hospital
City Kingswood
State/province NSW
ZIP/Postal code 2747
Country Australia
 
Platform ID GPL6947
Series (1)
GSE20346 Expression profiling of critically ill influenza and bacterial pneumonia patients, also influenza vaccination recipients

Data table header descriptions
ID_REF
VALUE cubic spline normalised intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 5.591004 0.2542819
ILMN_1736007 3.14359 0.4676044
ILMN_2383229 5.649643 0.08440915
ILMN_1671474 7.674218 0.1214031
ILMN_1772582 8.459546 0.1725955
ILMN_1735698 0.8588299 0.4163373
ILMN_1653355 8.668761 0.1037166
ILMN_1787689 -1.436041 0.64249
ILMN_1745607 -12.50093 0.9538867
ILMN_2136495 -1.185015 0.5151515
ILMN_1668111 -0.6758083 0.5649362
ILMN_1735045 7.122529 0.2068511
ILMN_1680754 -9.911898 0.8893281
ILMN_2375184 1.618002 0.2698224
ILMN_1755321 38.60493 0.001317523
ILMN_1698554 21.12525 0.02503294
ILMN_1814092 8.620008 0.168643
ILMN_1760414 9.728505 0.1462451
ILMN_2061446 56.04771 8.68E-07
ILMN_1752884 2.028953 0.372859

Total number of rows: 37804

Table truncated, full table size 1154 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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