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Sample GSM509739 Query DataSets for GSM509739
Status Public on Jun 30, 2011
Title Severe Influenza_day 4_patient B
Sample type RNA
 
Source name Severe Influenza_day 4_patient B
Organism Homo sapiens
Characteristics tissue: Paxgene Whole Blood RNA Samples
Treatment protocol Whole blood samples collected using PAXgene RNA tubes and stored at -20 degrees Celcius until processing
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene RNA
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion TotalPrep RNA Amplification Kit kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 4717421005_D
Data processing Data was normalised using cubic spline algorithm in Illumina BeadStudio V2.0
 
Submission date Feb 16, 2010
Last update date Jun 30, 2011
Contact name Grant Parnell
E-mail(s) [email protected]
Organization name University of Sydney
Department Nepean Clinical School
Lab Intensive Care
Street address Nepean Hospital
City Kingswood
State/province NSW
ZIP/Postal code 2747
Country Australia
 
Platform ID GPL6947
Series (1)
GSE20346 Expression profiling of critically ill influenza and bacterial pneumonia patients, also influenza vaccination recipients

Data table header descriptions
ID_REF
VALUE cubic spline normalised intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 -2.081024 0.6521739
ILMN_1736007 4.753299 0.2899627
ILMN_2383229 9.757973 0.07246478
ILMN_1671474 16.9143 0.09682319
ILMN_1772582 22.44223 0.02503294
ILMN_1735698 1.502504 0.458498
ILMN_1653355 3.445495 0.5212375
ILMN_1787689 6.508233 0.07722639
ILMN_1745607 0.9708661 0.4914361
ILMN_2136495 -0.3172763 0.5573123
ILMN_1668111 -1.333564 0.6642104
ILMN_1735045 6.839264 0.2555995
ILMN_1680754 17.37564 0.05797102
ILMN_2375184 -3.940276 0.907867
ILMN_1755321 6.449559 0.2727273
ILMN_1698554 19.78083 0.04347826
ILMN_1814092 2.051771 0.4347826
ILMN_1760414 -7.21513 0.85639
ILMN_2061446 114.6755 0
ILMN_1752884 7.369521 0.2397892

Total number of rows: 37804

Table truncated, full table size 1166 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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