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Sample GSM499133 Query DataSets for GSM499133
Status Public on Feb 17, 2011
Title P_B007
Sample type RNA
 
Source name Human hepatocellular carcinoma
Organism Homo sapiens
Characteristics tissue: hepatocellular carcinoma
vascular invasion: No
used for qpcr of microrna in chr19q13.41: Yes
Extracted molecule total RNA
Extraction protocol Using formalin-fixed, paraffin-embedded HCC tissues, total RNA was extracted using TRIzol (Invitrogen).
Label Cy5
Label protocol Refer to the Illumina beadarray Assay System Manual
 
Hybridization protocol Refer to the Illumina beadarray Assay System Manual
Scan protocol Refer to the Illumina beadarray Assay System Manual
Description none
Data processing For each probe, replicate mesurements were averaged after removing outliers. After subtracting background signal intensities, data were then normalized using the cubic spline algorithm.
 
Submission date Jan 20, 2010
Last update date Feb 17, 2011
Contact name Yujin Hoshida
Organization name University of Texas Southwestern Medical Center
Street address 5323 Harry Hines Blvd
City Dallas
State/province TX
ZIP/Postal code 75390
Country USA
 
Platform ID GPL8432
Series (3)
GSE19977 Gene-expression profiles of formalin-fixed, paraffin-embedded human hepatocellular carcinoma
GSE20140 Combining Clinical, Pathology, and Gene Expression Data to Predict Recurrence of Hepatocellular Carcinoma
GSE20596 MicroRNA-Based Classification of Hepatocellular Carcinoma and Oncogenic Role of miR-517a
Relations
Reanalysis of GSM499789

Data table header descriptions
ID_REF
VALUE Normalized signal intensities by BeadStudio software (Illumina)

Data table
ID_REF VALUE
ILMN_1809034 14105.6
ILMN_1660305 4545.68
ILMN_1762337 272.5609
ILMN_2055271 1950.671
ILMN_1814316 5498.377
ILMN_2359168 5036.485
ILMN_1731507 32.49413
ILMN_1787689 228.0524
ILMN_1745607 17854.59
ILMN_2136495 208.0584
ILMN_1668111 1231.014
ILMN_2295559 432.1451
ILMN_1735045 2148.739
ILMN_1680754 164.248
ILMN_2375184 851.3865
ILMN_1659452 751.2039
ILMN_1767388 1178.936
ILMN_1675204 360.0756
ILMN_1673870 1198.87
ILMN_1755321 3107.94

Total number of rows: 24526

Table truncated, full table size 524 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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