GEO help: Mouse over screen elements for information.
Status
Public on Aug 07, 2006
Title
28_GAL_TRE
Sample type
RNA
Channel 1 Source name
L. acidophilus, galactose
Organism
Lactobacillus acidophilus Extracted molecule
total RNA
Channel 2 Source name
L. acidophilus, trehalose
Organism
Lactobacillus acidophilus Extracted molecule
total RNA
Description
L. acidophilus cells, transferred at least five times in modified MRS medium (Barrangou et al, 2003) containing the carbohydrate of interest, were grown to an OD600 of 0.6, harvested and processed for microarray experiments (Azcarate-Peril et al, 2005).
Submission date
Apr 26, 2005
Last update date
Aug 07, 2006
Contact name
Todd Robert Klaenhammer
E-mail(s)
[email protected] , [email protected] , [email protected] Phone
919-515-2972
Fax
919 513 0014
Organization name
North Carolina State University
Department
Department of Food, Bioprocessing, and Nutrition Sciences
Street address
City
Raleigh
State/province
NC
ZIP/Postal code
27695
Country
USA
Platform ID
GPL1401 Series (1)
GSE2577 Transcriptional analysis of carbohydrate utilization by Lactobacillus acidophilus using whole-genome microarrays
Data table header descriptions ID_REF identifier reference column
RATIO (Cy5 Normalized - Background) / (Cy3 Normalized -Background)
VALUE log ratio (log2 of RATIO)
CH1_RAW raw signal output for channel 1
CH1_BKD background signal output for channel 1
CH1_SD standard deviation calculated for the mean signal for channel 1
CH1_BKD_SD standard deviation for the mean background signal for channel 1
CH2_RAW raw signal output for channel 2
CH2_BKD background signal output for channel 2
CH2_SD standard deviation calculated for the mean signal for channel 2
CH2_BKD_SD standard deviation for the mean background signal for channel 2
Data table ID_REF RATIO VALUE CH1_RAW CH1_BKD CH1_SD CH1_BKD_SD CH2_RAW CH2_BKD CH2_SD CH2_BKD_SD 1
1.10193732
0.140042164
2225.805664
534.458313
1735.414429
619.82959
1405.856445
260.791656
1347.697754
311.38504
2
0.988405628
-0.016824869
3515.209473
774.416687
2090.729492
647.589478
2231.043945
566.666687
1733.915039
519.538452
3
1.070513613
0.098303142
2351.936768
521.3125
2089.257568
519.242371
1492.764648
288.75
1403.158203
363.554657
4
1.055490174
0.077913148
3259.028076
551.1875
3039.637207
537.118591
1909.201416
153.229172
2199.137207
256.077148
5
0.846785523
-0.23993149
3847.273926
902.416687
2211.400146
762.292847
1893.297119
361.229156
1565.915894
369.782135
6
0.902792212
-0.147534121
3521.243896
774.6875
3616.894043
709.827759
1731.11792
207.708328
2579.029785
313.916565
7
1.258298659
0.331474388
4178.197754
512.854187
4052.211914
666.346558
3063.726563
230.125
2851.52124
298.492004
8
1.156904463
0.210269731
4014.086426
389.541656
4066.801514
462.782043
2742.165527
165.895828
3182.672363
298.524963
9
1.010078232
0.014467036
3802.420166
532.541687
3624.019287
481.031555
2250.022461
220.8125
2565.25708
271.012177
10
1.27818956
0.354101809
1858.092285
297.1875
1970.984863
466.766602
1385.111938
159.333328
1417.894043
236.249893
11
1.150405282
0.202142204
2543.426758
588.979187
1999.907593
760.607544
1533.594971
152.208328
1423.702271
223.014832
12
0.876681651
-0.189875043
2845.130371
655.270813
2224.964844
548.837524
1512.147461
332.645844
1333.223022
445.654083
13
1.392179132
0.477344855
5996.401367
461.375
6033.755859
607.470642
4930.918457
196.625
5075.357422
281.099945
14
1.284020699
0.360668459
5528.322266
394.1875
5714.108398
487.21051
4209.312988
159.083328
4392.029297
282.526428
15
1.209098777
0.27393211
4857.908203
507.6875
5273.577148
572.270386
3555.027344
323.458344
4030.086914
528.586914
16
1.233991227
0.303332138
4244.415527
292.083344
5702.250488
509.977783
3207.483643
211.041672
4619.478027
352.267609
17
1.207584024
0.272123576
5296.360352
473.395844
6933.21875
590.079773
3784.738281
206.479172
5464.884277
288.967194
18
0.981571997
-0.026834003
6153.789551
684.916687
7989.458496
713.38916
3663.781982
365.708344
5504.814453
404.790527
19
1.399346264
0.484752997
17878.90625
394
15142.27637
429.634583
15147.37695
114.958336
14429.39453
237.465515
20
1.441034962
0.527105338
15936.63867
522.229187
14394.66016
507.064056
13832.12305
184.979172
13814.22949
263.961029
5736 654 Kbytes .Supplementary data files not provided
