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Status
Public on Aug 07, 2006
Title
25_RAF_TRE
Sample type
RNA
Channel 1 Source name
L. acidophilus, raffinose
Organism
Lactobacillus acidophilus Extracted molecule
total RNA
Channel 2 Source name
L. acidophilus, trehalose
Organism
Lactobacillus acidophilus Extracted molecule
total RNA
Description
L. acidophilus cells, transferred at least five times in modified MRS medium (Barrangou et al, 2003) containing the carbohydrate of interest, were grown to an OD600 of 0.6, harvested and processed for microarray experiments (Azcarate-Peril et al, 2005).
Submission date
Apr 26, 2005
Last update date
Aug 07, 2006
Contact name
Todd Robert Klaenhammer
E-mail(s)
[email protected] , [email protected] , [email protected] Phone
919-515-2972
Fax
919 513 0014
Organization name
North Carolina State University
Department
Department of Food, Bioprocessing, and Nutrition Sciences
Street address
City
Raleigh
State/province
NC
ZIP/Postal code
27695
Country
USA
Platform ID
GPL1401 Series (1)
GSE2577 Transcriptional analysis of carbohydrate utilization by Lactobacillus acidophilus using whole-genome microarrays
Data table header descriptions ID_REF identifier reference column
RATIO (Cy5 Normalized - Background) / (Cy3 Normalized -Background)
VALUE log ratio (log2 of RATIO)
CH1_RAW raw signal output for channel 1
CH1_BKD background signal output for channel 1
CH1_SD standard deviation calculated for the mean signal for channel 1
CH1_BKD_SD standard deviation for the mean background signal for channel 1
CH2_RAW raw signal output for channel 2
CH2_BKD background signal output for channel 2
CH2_SD standard deviation calculated for the mean signal for channel 2
CH2_BKD_SD standard deviation for the mean background signal for channel 2
Data table ID_REF RATIO VALUE CH1_RAW CH1_BKD CH1_SD CH1_BKD_SD CH2_RAW CH2_BKD CH2_SD CH2_BKD_SD 1
1.592052335
0.670887762
6066.703125
948.375
4347.925293
741.880615
4046.946777
189.291672
5160.95166
300.026672
2
2.322567195
1.215720336
3796.174805
391.395844
3605.549316
446.77243
3841.14917
97.5
4922.62793
160.605896
3
1.48377646
0.569273757
5416.892578
815
4574.460938
689.183044
3363.678223
131.145828
4307.103027
255.07103
4
1.58810387
0.667305275
4565.544434
755.645813
4727.583984
810.520142
3035.169189
170.791672
4095.78125
226.589035
5
1.59442078
0.673032418
4709.304688
848.979187
4326.109375
1001.229187
3116.083984
202.25
4052.898438
356.288269
6
1.657281897
0.72881902
4318.826172
504.083344
4585.625488
502.754578
3120.72168
127.770836
4322.584473
211.394684
7
2.106073635
1.074555879
7593.37207
588.604187
7379.472656
583.26416
7154.141113
170.125
8819.647461
266.109528
8
2.154828544
1.107573081
8523.194336
881
8587.568359
1461.799561
8029.444336
233.5
9039.001953
299.96637
9
2.056228967
1.040000922
7773.871094
649.375
7125.552246
532.964966
7164.960449
229.6875
7427.210449
300.031494
10
1.711501619
0.775262657
5370.705566
857.895813
4215.043945
868.211792
3887.597168
231.125
4253.645996
337.428101
11
1.739856517
0.798968335
4034.152588
667.041687
3520.604004
713.990967
2958.688721
185.3125
3607.274658
229.926086
12
1.614503561
0.691090623
3984.318604
713.708313
3343.414063
649.882813
2730.802734
231
3162.420898
370.934875
13
2.13530638
1.094443086
11095.34863
778.229187
10546.12793
640.237183
10600.75098
171.416672
11943.28125
242.411545
14
2.005949445
1.004285247
12101.23731
897.6875
12151.49902
927.796265
10879.5625
240.25
12594.9082
355.975342
15
2.028265143
1.02024626
11894.33301
730.083313
10768.02344
550.637573
10923.58203
203.645828
11643.22949
280.823761
16
2.710642927
1.438635079
10229.42578
803.145813
10899.87207
780.546875
12336.43262
240.1875
15223.63477
417.840118
17
2.371527801
1.245816781
9074.694336
920.979187
9735.364258
937.313965
9362.623047
208.395828
11968.23438
257.373871
18
2.258955253
1.175655693
7300.970215
756.875
7965.188965
749.658752
7314.633789
316.291656
9685.075195
526.076172
19
2.36786656
1.243587781
25246.58789
545.583313
22104.40625
513.984009
27843.82617
154.666672
23007.17969
212.700195
20
2.01358758
1.009768223
27562.88477
764.166687
22167.11914
633.25116
25672.41211
126.4375
24177.21094
179.975052
5736 657 Kbytes .Supplementary data files not provided
