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Status
Public on Aug 07, 2006
Title
23_RAF_LAC
Sample type
RNA
Channel 1 Source name
L. acidophilus, raffinose
Organism
Lactobacillus acidophilus Extracted molecule
total RNA
Channel 2 Source name
L. acidophilus, lactose
Organism
Lactobacillus acidophilus Extracted molecule
total RNA
Description
L. acidophilus cells, transferred at least five times in modified MRS medium (Barrangou et al, 2003) containing the carbohydrate of interest, were grown to an OD600 of 0.6, harvested and processed for microarray experiments (Azcarate-Peril et al, 2005).
Submission date
Apr 26, 2005
Last update date
Aug 07, 2006
Contact name
Todd Robert Klaenhammer
E-mail(s)
[email protected] , [email protected] , [email protected] Phone
919-515-2972
Fax
919 513 0014
Organization name
North Carolina State University
Department
Department of Food, Bioprocessing, and Nutrition Sciences
Street address
City
Raleigh
State/province
NC
ZIP/Postal code
27695
Country
USA
Platform ID
GPL1401 Series (1)
GSE2577 Transcriptional analysis of carbohydrate utilization by Lactobacillus acidophilus using whole-genome microarrays
Data table header descriptions ID_REF identifier reference column
RATIO (Cy5 Normalized - Background) / (Cy3 Normalized -Background)
VALUE log ratio (log2 of RATIO)
CH1_RAW raw signal output for channel 1
CH1_BKD background signal output for channel 1
CH1_SD standard deviation calculated for the mean signal for channel 1
CH1_BKD_SD standard deviation for the mean background signal for channel 1
CH2_RAW raw signal output for channel 2
CH2_BKD background signal output for channel 2
CH2_SD standard deviation calculated for the mean signal for channel 2
CH2_BKD_SD standard deviation for the mean background signal for channel 2
Data table ID_REF RATIO VALUE CH1_RAW CH1_BKD CH1_SD CH1_BKD_SD CH2_RAW CH2_BKD CH2_SD CH2_BKD_SD 1
2.232130603
1.158421442
1631.523438
567.291687
958.416199
685.961914
678.893921
91.895836
866.220642
164.193222
2
1.464131519
0.550045153
2313.235352
797.270813
1296.356934
751.030762
635.77887
87.3125
874.341797
179.052734
3
1.231507532
0.300425452
2506.101318
1039.333374
654.026428
993.006592
540.062256
93.708336
650.140442
186.006973
4
1.918314471
0.939839242
1919.747925
558.604187
1071.942749
611.940918
729.736145
84.520836
690.160706
150.507797
5
1.799860016
0.847884705
2031.048584
752.854187
752.230652
899.69165
644.190063
75.708336
554.606689
133.687302
6
2.117518676
1.082374694
2164.515869
896.645813
720.880188
886.836182
902.119629
238.708328
524.210083
242.274063
7
4.140995747
2.049977721
2513.621826
458.791656
2506.320801
599.041565
2206.228027
103.604164
3007.12207
178.335297
8
3.798559651
1.925452477
2545.527344
517.3125
2466.777588
750.265808
1983.246094
79.479164
2958.824951
121.498093
9
2.500772224
1.32237366
2972.567139
744.75
2364.79248
684.630859
1491.101563
114.416664
2369.792236
204.143021
10
1.966338463
0.975511672
1849.227051
431.854156
1243.743652
444.58017
829.772522
141.083328
913.039734
276.073914
11
2.437276511
1.285269935
1691.44165
439.395844
1254.960083
534.366211
813.955811
59.895832
865.229248
139.601898
12
1.357060192
0.440484712
2178.981201
848.458313
927.424805
885.88562
539.713684
93.541664
464.801239
139.148315
13
3.888120907
1.959073083
3064.365234
553.354187
2101.642334
589.034302
2537.323242
124.8125
2256.911621
207.295822
14
3.717753516
1.894431124
2816.911865
341.895844
2655.259277
395.13208
2364.816406
91.083336
2930.243164
136.831131
15
2.898408457
1.535260921
3673.687256
707.833313
3618.601807
795.5047
2298.466309
174.291672
3394.326416
238.758224
16
4.439756794
2.150480649
2595.748535
545.020813
2933.228271
643.920349
2305.342285
55.520832
3922.247559
113.61731
17
3.075431304
1.620788751
3200.455322
652.916687
2997.799805
610.07074
2024.385376
88.375
4047.136475
185.744125
18
2.465362047
1.301799527
3349.669922
1034.395874
2460.101807
989.256531
1544.324585
133.854172
3073.680664
171.943954
19
4.953738644
2.308517755
11580.77832
531.145813
15836.29688
541.204407
13610.20117
84.4375
18701.78906
159.776566
20
4.387266272
2.133322269
12119.48535
418.375
18514.07813
511.110718
12769.33496
84
18924.10938
146.070221
5736 649 Kbytes .Supplementary data files not provided
