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Status
Public on Aug 07, 2006
Title
20_LAC_FOS
Sample type
RNA
Channel 1 Source name
L. acidophilus, lactose
Organism
Lactobacillus acidophilus Extracted molecule
total RNA
Channel 2 Source name
L. acidophilus, fructooligosaccharides
Organism
Lactobacillus acidophilus Extracted molecule
total RNA
Description
L. acidophilus cells, transferred at least five times in modified MRS medium (Barrangou et al, 2003) containing the carbohydrate of interest, were grown to an OD600 of 0.6, harvested and processed for microarray experiments (Azcarate-Peril et al, 2005).
Submission date
Apr 26, 2005
Last update date
Aug 07, 2006
Contact name
Todd Robert Klaenhammer
E-mail(s)
[email protected] , [email protected] , [email protected] Phone
919-515-2972
Fax
919 513 0014
Organization name
North Carolina State University
Department
Department of Food, Bioprocessing, and Nutrition Sciences
Street address
City
Raleigh
State/province
NC
ZIP/Postal code
27695
Country
USA
Platform ID
GPL1401 Series (1)
GSE2577 Transcriptional analysis of carbohydrate utilization by Lactobacillus acidophilus using whole-genome microarrays
Data table header descriptions ID_REF identifier reference column
RATIO (Cy5 Normalized - Background) / (Cy3 Normalized -Background)
VALUE log ratio (log2 of RATIO)
CH1_RAW raw signal output for channel 1
CH1_BKD background signal output for channel 1
CH1_SD standard deviation calculated for the mean signal for channel 1
CH1_BKD_SD standard deviation for the mean background signal for channel 1
CH2_RAW raw signal output for channel 2
CH2_BKD background signal output for channel 2
CH2_SD standard deviation calculated for the mean signal for channel 2
CH2_BKD_SD standard deviation for the mean background signal for channel 2
Data table ID_REF RATIO VALUE CH1_RAW CH1_BKD CH1_SD CH1_BKD_SD CH2_RAW CH2_BKD CH2_SD CH2_BKD_SD 1
0.932736475
-0.10045856
2610.166016
219.395828
2497.525879
321.947784
2469.436523
150.3125
2346.768311
258.396637
2
1.079312895
0.110113166
2778.991943
373.875
2143.79834
444.288177
3129.79541
430.125
2689.8479
710.360107
3
0.825108381
-0.27734446
3456.461914
202.479172
3516.894775
352.823914
2992.744385
200.5
2730.651123
245.317337
4
1.016183191
0.023160505
2978.55249
174.854172
3302.680908
239.527908
3138.804443
175.8125
3581.575928
267.59906
5
1.046446597
0.065498689
2799.859863
149.666672
3496.789307
229.220825
3007.134521
122.958336
3804.604248
218.430954
6
0.92850818
-0.107013475
3915.259766
391.083344
4229.084473
412.646667
3582.484131
179.416672
3848.883301
239.23938
7
1.107919481
0.147853037
3637.656738
268.4375
3267.398438
380.357666
3951.956543
69.875
3998.398193
136.730774
8
1.04459946
0.062949863
3953.575195
265.6875
3536.787354
342.386505
4127.52832
121.125
4003.376953
242.002335
9
1.057164608
0.080200031
3733.345215
291.979156
3577.548584
435.245575
3931.539551
147.979172
3814.911865
186.201279
10
0.920214868
-0.119957329
3719.371338
376.979156
4217.853027
437.780457
3350.264893
151.5625
3986.758789
254.110794
11
1.011813904
0.01694397
4041.177734
360.125
4370.839355
496.920929
4042.842041
169.375
4789.074219
201.494171
12
0.91190543
-0.133043879
3594.110107
309.479156
4348.926758
468.72403
3258.414551
143.375
4230.240723
220.08844
13
1.077796374
0.108084638
6072.260254
244.9375
5428.163574
441.874603
6656.384766
124.583336
6008.414551
193.400345
14
1.159237422
0.213176073
5880.833984
259.354156
5576.746582
361.37384
6951.407227
174.208328
6913.387695
317.540558
15
1.112991819
0.154442989
6750
242.895828
5574.107422
284.25351
7697.649414
165.708328
7162.072754
225.25853
16
0.732618479
-0.448866004
13552.26367
312.854156
15352.11816
387.469299
10260.33301
173.0625
11731.42871
245.050446
17
0.741271365
-0.431926312
13021.11914
354.479156
14810.66016
505.311707
9994.834961
229.979172
11127.74805
312.765106
18
0.706196337
-0.501858757
10643.77051
197.625
13016.86231
331.241791
7826.335449
154.333328
9835.87207
253.402069
19
0.982830748
-0.024985102
28468.85547
210.875
22648.91602
263.178101
28988.02344
104.708336
22863.30273
152.656616
20
0.982798747
-0.025032077
29305
217.770828
23382.85352
292.847809
29842.36328
112.416664
22913.35352
246.701889
5736 653 Kbytes .Supplementary data files not provided
