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Status
Public on Aug 07, 2006
Title
18_SUC_TRE
Sample type
RNA
Channel 1 Source name
L. acidophilus, sucrose
Organism
Lactobacillus acidophilus Extracted molecule
total RNA
Channel 2 Source name
L. acidophilus, trehalose
Organism
Lactobacillus acidophilus Extracted molecule
total RNA
Description
L. acidophilus cells, transferred at least five times in modified MRS medium (Barrangou et al, 2003) containing the carbohydrate of interest, were grown to an OD600 of 0.6, harvested and processed for microarray experiments (Azcarate-Peril et al, 2005).
Submission date
Apr 26, 2005
Last update date
Aug 07, 2006
Contact name
Todd Robert Klaenhammer
E-mail(s)
[email protected] , [email protected] , [email protected] Phone
919-515-2972
Fax
919 513 0014
Organization name
North Carolina State University
Department
Department of Food, Bioprocessing, and Nutrition Sciences
Street address
City
Raleigh
State/province
NC
ZIP/Postal code
27695
Country
USA
Platform ID
GPL1401 Series (1)
GSE2577 Transcriptional analysis of carbohydrate utilization by Lactobacillus acidophilus using whole-genome microarrays
Data table header descriptions ID_REF identifier reference column
RATIO (Cy5 Normalized - Background) / (Cy3 Normalized -Background)
VALUE log ratio (log2 of RATIO)
CH1_RAW raw signal output for channel 1
CH1_BKD background signal output for channel 1
CH1_SD standard deviation calculated for the mean signal for channel 1
CH1_BKD_SD standard deviation for the mean background signal for channel 1
CH2_RAW raw signal output for channel 2
CH2_BKD background signal output for channel 2
CH2_SD standard deviation calculated for the mean signal for channel 2
CH2_BKD_SD standard deviation for the mean background signal for channel 2
Data table ID_REF RATIO VALUE CH1_RAW CH1_BKD CH1_SD CH1_BKD_SD CH2_RAW CH2_BKD CH2_SD CH2_BKD_SD 1
0.977770627
-0.032432029
2887.276367
512.0625
2542.111572
612.214844
1428.015747
161.458328
1886.505249
300.60025
2
1.274452802
0.349877946
2224.413086
552.708313
1838.592651
738.003052
1412.87854
250.979172
1416.520996
406.51358
3
0.968381518
-0.04635255
2319.792725
357.020844
1729.709351
424.512573
1179.285156
142.708328
1298.598267
259.539673
4
1.034147246
0.048441617
3155.829102
562.208313
2530.057129
664.522888
1671.909058
209.145828
1716.175415
316.919891
5
1.339885054
0.42210924
2288.666748
450.9375
1959.907104
608.739197
1570.62085
227.75
1743.099731
362.020203
6
1.10983391
0.150343789
3044.776855
461.8125
2202.291748
542.412231
1642.140137
78.770836
1747.48645
192.514526
7
1.172900282
0.230080363
4153.848145
530.208313
3954.61377
761.331482
2462.694336
144.8125
2846.421631
288.684143
8
1.198108302
0.260758326
3890.508057
483.166656
3118.536133
522.417175
2317.721924
91.354164
2162.042969
193.709198
9
1.301277871
0.379929063
3030.95874
338.5
2494.031738
437.104492
2172.043457
261.291656
1885.111572
363.795074
10
1.067609599
0.094384182
2594.523193
563.916687
1991.264038
727.432983
1369.434204
187.145828
1706.265259
319.079132
11
1.204861221
0.268866983
1878.616089
404.020844
1699.752319
597.52063
1116.540039
147.604172
1283.318726
236.607117
12
1.071895665
0.100164485
1894.814941
468.833344
1617.553589
724.987427
1027.296631
193.708328
1201.505005
351.036041
13
1.265430031
0.339627739
5653.062012
825.041687
4201.606934
1277.556519
3633.507568
301.604156
3268.585449
492.471222
14
1.287409148
0.364470625
5547.408203
772.604187
3982.186035
1121.300171
3812.265625
459.854156
3199.70459
879.569885
15
1.140205936
0.189294417
4753.544922
428.208344
4194.700195
528.76001
2971.666748
282.0625
2405.514404
410.518494
16
1.188656457
0.24933181
8479.749023
716.458313
8896.133789
765.908264
5210
177.458328
6549.788086
299.568542
17
1.267245157
0.34169565
5446.92627
518.333313
6007.341797
732.880371
3540.689209
134.5
4461.89209
229.961975
18
1.210255631
0.275311807
6499.090332
502.729156
6848.308105
682.128113
4157.078125
199.3125
5471.227051
346.474213
19
1.630183617
0.705034472
16135.16016
1019.479187
12280.3252
1482.278687
13889.56152
451.104156
11077.55957
552.626099
20
1.398139895
0.483508721
18650.60547
1199.916626
12407.86816
1517.604126
13783.21387
477.1875
11478.92285
970.846313
5736 653 Kbytes .Supplementary data files not provided
