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Sample GSM49642 Query DataSets for GSM49642
Status Public on Aug 07, 2006
Title 17_GAL_SUC
Sample type RNA
 
Channel 1
Source name L. acidophilus, galactose
Organism Lactobacillus acidophilus
Extracted molecule total RNA
 
Channel 2
Source name L. acidophilus, sucrose
Organism Lactobacillus acidophilus
Extracted molecule total RNA
 
 
Description L. acidophilus cells, transferred at least five times in modified MRS medium (Barrangou et al, 2003) containing the carbohydrate of interest, were grown to an OD600 of 0.6, harvested and processed for microarray experiments (Azcarate-Peril et al, 2005).
 
Submission date Apr 26, 2005
Last update date Aug 07, 2006
Contact name Todd Robert Klaenhammer
E-mail(s) [email protected], [email protected], [email protected]
Phone 919-515-2972
Fax 919 513 0014
Organization name North Carolina State University
Department Department of Food, Bioprocessing, and Nutrition Sciences
Street address
City Raleigh
State/province NC
ZIP/Postal code 27695
Country USA
 
Platform ID GPL1401
Series (1)
GSE2577 Transcriptional analysis of carbohydrate utilization by Lactobacillus acidophilus using whole-genome microarrays

Data table header descriptions
ID_REF identifier reference column
RATIO (Cy5 Normalized - Background) / (Cy3 Normalized -Background)
VALUE log ratio (log2 of RATIO)
CH1_RAW raw signal output for channel 1
CH1_BKD background signal output for channel 1
CH1_SD standard deviation calculated for the mean signal for channel 1
CH1_BKD_SD standard deviation for the mean background signal for channel 1
CH2_RAW raw signal output for channel 2
CH2_BKD background signal output for channel 2
CH2_SD standard deviation calculated for the mean signal for channel 2
CH2_BKD_SD standard deviation for the mean background signal for channel 2

Data table
ID_REF RATIO VALUE CH1_RAW CH1_BKD CH1_SD CH1_BKD_SD CH2_RAW CH2_BKD CH2_SD CH2_BKD_SD
1 1.458255312 0.54424333 5212.532227 1440.75 4094.002441 1387.759033 3884.854736 764.270813 3484.486084 695.364746
2 1.351456953 0.434515559 5387.086426 1963.770874 3314.367676 2269.265381 3533.518799 908.666687 2810.335938 883.013733
3 1.174729203 0.232328227 7784.111328 3021.020752 1415.93396 1725.266357 4793.446777 1618.895874 1918.423218 1233.331909
4 0.988914813 -0.016081845 5251.67041 1480.8125 2539.092041 1017.153809 2812.119873 696.416687 1711.6698 570.626404
5 1.021992075 0.031384009 5598.477051 1472.458374 2534.672363 850.729675 3038.257568 645.854187 2294.875488 443.738312
6 0.98879021 -0.016263635 7271.807129 1815.8125 5193.863281 1207.549072 3872.041748 811.25 2922.813721 505.199707
7 0.896459593 -0.157689538 4514.067871 716.916687 4312.220215 724.585449 3858.397949 229.770828 4360.513672 273.872314
8 1.291009344 0.368499442 6162.932129 1529.666626 4240.257324 1219.686401 4019.107422 625.416687 3801.83374 614.63739
9 1.03232894 0.045902743 6116.876953 1160.479126 4751.771484 817.506592 3405.827637 502.875 3859.041992 492.106659
10 1.254739639 0.327388033 4547.569824 1099.291626 3081.602539 883.637756 2860.003662 405.229156 2111.906494 398.843506
11 1.62137785 0.697220339 5544.708008 1987.583374 3216.508789 2381.515625 4366.547852 1094.354126 3085.634521 1147.134644
12 1.347394766 0.430172601 4702.861328 1774.0625 1702.618652 1345.300903 3189.781982 950.854187 1502.387085 747.746033
13 1.589807862 0.668852418 6681.077637 690.166687 6467.612305 503.646667 5646.578613 242.854172 6727.503906 369.890961
14 1.350439977 0.433429518 7548.661621 1105.895874 6362.118164 770.617737 5599.674316 663.354187 6392.399902 895.734436
15 1.330554171 0.412027248 7823.331543 1128.291626 7279.532227 630.891052 5642.030273 587.958313 6796.325195 529.62915
16 1.711208413 0.77501548 9359.461914 1496.333374 11629.33301 1609.449829 8315.302734 681.270813 10865.12012 814.535034
17 1.287345325 0.364399102 8671.293945 1237.958374 11824.79102 1440.919434 6066.183105 637 9485.929688 919.098267
18 0.914314602 -0.129237434 14016.08008 2825.229248 11353.92969 2580.687988 7132.017578 1326.854126 7519.082031 1389.905029
19 1.668855978 0.738859456 20557.08984 559.666687 19134.24414 531.680603 19195.0625 260.791656 19357.48242 274.48349
20 1.50598532 0.590707707 21755.96289 1162.083374 19624.25781 921.18457 18058.67188 462.645844 19273.32813 386.954803

Total number of rows: 5736

Table truncated, full table size 668 Kbytes.




Supplementary data files not provided
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