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Status
Public on Aug 07, 2006
Title
13_TRE_FRU
Sample type
RNA
Channel 1 Source name
L. acidophilus, trehalose
Organism
Lactobacillus acidophilus Extracted molecule
total RNA
Channel 2 Source name
L. acidophilus, fructose
Organism
Lactobacillus acidophilus Extracted molecule
total RNA
Description
L. acidophilus cells, transferred at least five times in modified MRS medium (Barrangou et al, 2003) containing the carbohydrate of interest, were grown to an OD600 of 0.6, harvested and processed for microarray experiments (Azcarate-Peril et al, 2005).
Submission date
Apr 26, 2005
Last update date
Aug 07, 2006
Contact name
Todd Robert Klaenhammer
E-mail(s)
[email protected] , [email protected] , [email protected] Phone
919-515-2972
Fax
919 513 0014
Organization name
North Carolina State University
Department
Department of Food, Bioprocessing, and Nutrition Sciences
Street address
City
Raleigh
State/province
NC
ZIP/Postal code
27695
Country
USA
Platform ID
GPL1401 Series (1)
GSE2577 Transcriptional analysis of carbohydrate utilization by Lactobacillus acidophilus using whole-genome microarrays
Data table header descriptions ID_REF identifier reference column
RATIO (Cy5 Normalized - Background) / (Cy3 Normalized -Background)
VALUE log ratio (log2 of RATIO)
CH1_RAW raw signal output for channel 1
CH1_BKD background signal output for channel 1
CH1_SD standard deviation calculated for the mean signal for channel 1
CH1_BKD_SD standard deviation for the mean background signal for channel 1
CH2_RAW raw signal output for channel 2
CH2_BKD background signal output for channel 2
CH2_SD standard deviation calculated for the mean signal for channel 2
CH2_BKD_SD standard deviation for the mean background signal for channel 2
Data table ID_REF RATIO VALUE CH1_RAW CH1_BKD CH1_SD CH1_BKD_SD CH2_RAW CH2_BKD CH2_SD CH2_BKD_SD 1
1.287409711
0.364471257
6103.163574
688.6875
6066.422363
615.667053
6536.574707
588
6496.367676
846.175842
2
1.266067344
0.340354146
6590.591797
666.354187
6085.085449
554.956604
6752.847168
352.125
7205.17627
457.166382
3
1.150667613
0.20247115
6759.441895
893.270813
6155.831543
686.981445
6338.039551
577.75
6484.132324
676.034241
4
1.289379558
0.366677016
6095.004883
760.958313
5746.085938
601.605774
6399.844727
530.666687
7384.575195
618.722534
5
1.247662161
0.319227338
5854.692871
627.583313
5789.162598
746.137146
5894.403809
328.979156
6674.101074
460.424561
6
0.988104017
-0.017265174
8268.913086
930.354187
8605.225586
851.667786
6784.915527
596.875
7947.932129
731.449524
7
1.016603929
0.023757711
11310.30078
875
11043.2168
706.424377
9695.582031
642.5
10141.2832
738.947632
8
0.890871999
-0.166709935
11011.0957
1004.270813
10866.8291
933.151123
8226.74707
619.083313
8019.275391
763.893799
9
0.899683062
-0.152511233
13361.2627
717.375
14210.33203
709.229065
10146.51367
438.958344
11688.35254
563.764099
10
0.943369201
-0.084105595
6041.011719
723.833313
4160.69043
734.199951
4884.830078
604.25
3053.069336
699.057373
11
1.07122389
0.09926004
5552.805176
557.4375
4061.064697
681.764832
5026.666504
460.125
3310.716797
483.678894
12
1.003199398
0.004608387
4092.534668
593.041687
2896.631348
715.060791
3283.099609
287.166656
2700.927246
354.338165
13
1.037291163
0.052820908
15905.72363
974.916687
14352.62402
716.173645
13787.88574
571.166687
13902.64941
594.659485
14
0.939083846
-0.090674121
14901.21777
884.875
14569.44922
776.029724
11886.54004
653.979187
11574.41016
754.750793
15
1.011605562
0.016646874
17713.50781
732.791687
16777.52344
559.662903
15189.04492
529.958313
15569.00781
576.397766
16
1.013159423
0.018861204
12961.375
706.104187
12589.67578
645.591919
11134.19141
538.229187
11567.37891
716.318054
17
1.07332798
0.102090992
14585.90527
577.104187
15407.61231
633.367798
13277.58106
446.208344
13857.26953
494.826996
18
0.968535276
-0.046123499
11174.99609
580.4375
13642.24902
635.395203
9255.962891
499.3125
11745.53125
656.526123
19
1.109741861
0.150224128
35869.94531
861.583313
20668.0625
899.50592
33714.95703
561.145813
20349.02734
550.513794
20
0.986539208
-0.019551705
36766.54297
786.5625
22533.50391
699.865356
30800.51172
509.416656
21672.10547
610.3172
5736 661 Kbytes .Supplementary data files not provided
