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Sample GSM49636 Query DataSets for GSM49636
Status Public on Aug 07, 2006
Title 11_LAC_FRU
Sample type RNA
 
Channel 1
Source name L. acidophilus, lactose
Organism Lactobacillus acidophilus
Extracted molecule total RNA
 
Channel 2
Source name L. acidophilus, fructose
Organism Lactobacillus acidophilus
Extracted molecule total RNA
 
 
Description L. acidophilus cells, transferred at least five times in modified MRS medium (Barrangou et al, 2003) containing the carbohydrate of interest, were grown to an OD600 of 0.6, harvested and processed for microarray experiments (Azcarate-Peril et al, 2005).
 
Submission date Apr 26, 2005
Last update date Aug 07, 2006
Contact name Todd Robert Klaenhammer
E-mail(s) [email protected], [email protected], [email protected]
Phone 919-515-2972
Fax 919 513 0014
Organization name North Carolina State University
Department Department of Food, Bioprocessing, and Nutrition Sciences
Street address
City Raleigh
State/province NC
ZIP/Postal code 27695
Country USA
 
Platform ID GPL1401
Series (1)
GSE2577 Transcriptional analysis of carbohydrate utilization by Lactobacillus acidophilus using whole-genome microarrays

Data table header descriptions
ID_REF identifier reference column
RATIO (Cy5 Normalized - Background) / (Cy3 Normalized -Background)
VALUE log ratio (log2 of RATIO)
CH1_RAW raw signal output for channel 1
CH1_BKD background signal output for channel 1
CH1_SD standard deviation calculated for the mean signal for channel 1
CH1_BKD_SD standard deviation for the mean background signal for channel 1
CH2_RAW raw signal output for channel 2
CH2_BKD background signal output for channel 2
CH2_SD standard deviation calculated for the mean signal for channel 2
CH2_BKD_SD standard deviation for the mean background signal for channel 2

Data table
ID_REF RATIO VALUE CH1_RAW CH1_BKD CH1_SD CH1_BKD_SD CH2_RAW CH2_BKD CH2_SD CH2_BKD_SD
1 0.872862527 -0.196173642 1730.533081 237.770828 2695.105469 414.83194 2760.654785 443.583344 3363.859375 609.528259
2 0.849088249 -0.236013588 2046.008057 254.645828 2979.667969 380.730957 3220.741699 515.916687 4132.689941 583.403137
3 0.864199036 -0.210564474 1726.059326 273.875 2667.325439 438.073242 2934.859375 703.145813 3021.588135 864.560059
4 1.016661125 0.023838879 1537.942993 200 1780.680176 389.693939 2793.143555 374.25 3320.562012 465.836639
5 0.688469154 -0.538536077 1631.169067 218.729172 1863.21167 336.713135 2184.644287 455.395844 2243.335938 585.837708
6 0.694275131 -0.5264206 2147.119385 338.395844 2516.859619 408.595978 2815.759277 582.666687 2810.495605 636.186768
7 0.663117004 -0.592664645 2570.828613 123.604164 3468.743408 262.436676 3306.241943 420.4375 3500.479736 527.547913
8 0.652376469 -0.616223349 3159.852295 201.854172 4226.851074 335.817902 3855.556885 423.9375 4128.380371 598.264587
9 0.534252458 -0.904406455 2936.222168 284.791656 3977.907471 412.816681 2902.842285 383.833344 3343.478027 555.719299
10 0.868348189 -0.203654446 1319.870483 97.958336 1825.17395 196.338821 2293.055908 406.208344 2625.195801 570.216187
11 0.770751456 -0.375662386 1555.785767 415.520844 1500.201416 585.843323 1902.474854 339.604156 2094.863525 499.088257
12 1.055480302 0.077899655 1454.704956 257.958344 1469.68457 349.247894 2864.8396 618.604187 1973.386963 628.366882
13 0.725123557 -0.463701252 4493.765137 183.708328 5490.911621 342.625336 6003.173828 445.4375 6708.682129 545.255676
14 0.681259997 -0.553722599 4842.586426 125.479164 6160.817383 236.881241 6197.071289 482.395844 6976.316895 662.973633
15 0.625392316 -0.677166602 4712.719727 180.333328 6629.763184 258.590393 5426.331055 385.729156 7694.789063 503.763092
16 0.574941894 -0.798511936 4859.453125 85.416664 7936.766113 173.501099 5138.334473 257.291656 7746.296387 408.752533
17 0.533334121 -0.906888465 5740.820313 222.8125 8351.227539 358.363647 5617.033203 383.625 8360.321289 438.976501
18 0.570627119 -0.809379783 5261.092285 271.083344 8661.674805 431.328033 5715.047363 651.479187 7664.971191 693.381042
19 0.636405236 -0.65198239 18791.68555 151.625 19921.25 324.301971 21419.8418 324.625 20477.03516 464.864563
20 0.563805013 -0.826731789 20600.24219 181.9375 20884.23047 269.080353 20851.98438 380.395844 20933.02539 747.507568

Total number of rows: 5736

Table truncated, full table size 656 Kbytes.




Supplementary data files not provided
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