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Status
Public on Aug 07, 2006
Title
9_FOS_FRU
Sample type
RNA
Channel 1 Source name
L. acidophilus, fructooligosaccharides
Organism
Lactobacillus acidophilus Extracted molecule
total RNA
Channel 2 Source name
L. acidophilus, fructose
Organism
Lactobacillus acidophilus Extracted molecule
total RNA
Description
L. acidophilus cells, transferred at least five times in modified MRS medium (Barrangou et al, 2003) containing the carbohydrate of interest, were grown to an OD600 of 0.6, harvested and processed for microarray experiments (Azcarate-Peril et al, 2005).
Submission date
Apr 26, 2005
Last update date
Aug 07, 2006
Contact name
Todd Robert Klaenhammer
E-mail(s)
[email protected] , [email protected] , [email protected] Phone
919-515-2972
Fax
919 513 0014
Organization name
North Carolina State University
Department
Department of Food, Bioprocessing, and Nutrition Sciences
Street address
City
Raleigh
State/province
NC
ZIP/Postal code
27695
Country
USA
Platform ID
GPL1401 Series (1)
GSE2577 Transcriptional analysis of carbohydrate utilization by Lactobacillus acidophilus using whole-genome microarrays
Data table header descriptions ID_REF identifier reference column
RATIO (Cy5 Normalized - Background) / (Cy3 Normalized -Background)
VALUE log ratio (log2 of RATIO)
CH1_RAW raw signal output for channel 1
CH1_BKD background signal output for channel 1
CH1_SD standard deviation calculated for the mean signal for channel 1
CH1_BKD_SD standard deviation for the mean background signal for channel 1
CH2_RAW raw signal output for channel 2
CH2_BKD background signal output for channel 2
CH2_SD standard deviation calculated for the mean signal for channel 2
CH2_BKD_SD standard deviation for the mean background signal for channel 2
Data table ID_REF RATIO VALUE CH1_RAW CH1_BKD CH1_SD CH1_BKD_SD CH2_RAW CH2_BKD CH2_SD CH2_BKD_SD 1
1.19399015
0.255790935
1058.892212
224.729172
594.606384
206.365067
933.561157
125.916664
782.952942
181.100632
2
1.384366046
0.469225463
997.911499
165.6875
1148.019653
172.822021
1080.26355
146.020828
2583.556152
199.149307
3
1.469662877
0.555485256
990.333313
272.479156
469.763336
245.483719
1145.442383
289.9375
572.747375
303.646088
4
0.99144713
-0.012392254
1402.0448
241.083328
755.407166
159.868149
1082.103638
148.729172
925.025879
158.718506
5
1.243138867
0.313987464
966.120361
235.9375
529.990906
262.634247
863.092041
127.020836
700.811462
174.634506
6
1.049590655
0.06982678
1676.483521
348.854156
1091.051147
330.034241
1346.528442
216.5625
1082.100952
268.328705
7
1.382275515
0.467045202
1067.20813
174.3125
817.876587
172.524948
1070.921509
70.083336
1062.668213
120.975967
8
1.613183052
0.689910154
1023.338562
172.708328
641.44342
159.307266
1223.342407
110.604164
1046.509033
125.913132
9
1.398557543
0.483939614
939.961548
251.25
415.384705
238.008804
912.834167
131.770828
649.963501
133.424805
10
1.45282983
0.53886573
1984.660156
351.125
1465.096191
676.370667
2148.056152
223.583328
2291.06665
530.03186
11
1.485544386
0.570991712
1610.726318
230.8125
1327.637085
214.850433
1807.43335
145.145828
1909.12439
169.463608
12
1.461772409
0.547718708
1223.593384
234.041672
742.180908
213.681702
1349.344727
176.375
1271.781982
175.92572
13
1.617555958
0.693815622
2266.324219
267.020844
1651.476807
263.194153
2804.258545
181.8125
2442.510742
462.100464
14
1.598269131
0.676510362
1964.18335
230.3125
1594.219849
243.169159
2387.97876
140.8125
2448.999756
298.020905
15
1.706778025
0.771275441
1478.904785
310.333344
1033.582275
324.776093
1782.150757
164.8125
1515.670776
181.275589
16
3.712123164
1.892244578
6562.953125
449.416656
6732.462402
675.632202
18619.42578
216.645828
21891.48438
518.642578
17
4.44616136
2.152560308
5591.459473
312.958344
6052.871582
277.279327
19198.58008
167.458328
20501.95313
220.602936
18
4.213174621
2.074907712
5109.881836
285.354156
4926.943359
177.761795
16660.11914
177.25
18018.62695
208.601166
19
3.46697081
1.79367569
12921.66113
251.25
10784.59961
245.55188
35862.77344
241.5
22928.37891
476.546265
20
3.459376118
1.790511878
11299.8418
317.5625
10224.55859
396.979431
31109.52148
301.854156
25043.10352
956.944824
5736 646 Kbytes .Supplementary data files not provided
