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Status
Public on Aug 07, 2006
Title
8_FRU_SUC
Sample type
RNA
Channel 1 Source name
L. acidophilus, fructose
Organism
Lactobacillus acidophilus Extracted molecule
total RNA
Channel 2 Source name
L. acidophilus, sucrose
Organism
Lactobacillus acidophilus Extracted molecule
total RNA
Description
L. acidophilus cells, transferred at least five times in modified MRS medium (Barrangou et al, 2003) containing the carbohydrate of interest, were grown to an OD600 of 0.6, harvested and processed for microarray experiments (Azcarate-Peril et al, 2005).
Submission date
Apr 26, 2005
Last update date
Aug 07, 2006
Contact name
Todd Robert Klaenhammer
E-mail(s)
[email protected] , [email protected] , [email protected] Phone
919-515-2972
Fax
919 513 0014
Organization name
North Carolina State University
Department
Department of Food, Bioprocessing, and Nutrition Sciences
Street address
City
Raleigh
State/province
NC
ZIP/Postal code
27695
Country
USA
Platform ID
GPL1401 Series (1)
GSE2577 Transcriptional analysis of carbohydrate utilization by Lactobacillus acidophilus using whole-genome microarrays
Data table header descriptions ID_REF identifier reference column
RATIO (Cy5 Normalized - Background) / (Cy3 Normalized -Background)
VALUE log ratio (log2 of RATIO)
CH1_RAW raw signal output for channel 1
CH1_BKD background signal output for channel 1
CH1_SD standard deviation calculated for the mean signal for channel 1
CH1_BKD_SD standard deviation for the mean background signal for channel 1
CH2_RAW raw signal output for channel 2
CH2_BKD background signal output for channel 2
CH2_SD standard deviation calculated for the mean signal for channel 2
CH2_BKD_SD standard deviation for the mean background signal for channel 2
Data table ID_REF RATIO VALUE CH1_RAW CH1_BKD CH1_SD CH1_BKD_SD CH2_RAW CH2_BKD CH2_SD CH2_BKD_SD 1
1.620036862
0.696026641
4435.50293
777.5
2933.31665
675.5354
2940.989258
100.5
3187.189209
169.431595
2
2.231292611
1.15787972
4434.930176
707.4375
3853.971436
678.923828
4156.32373
169.770828
4695.09082
249.459183
3
0.552925505
-0.854842975
2350.605957
966.9375
641.601685
955.940735
534.31427
167.604172
328.346375
219.746445
4
1.052837536
0.07428283
5068.436035
648.645813
4869.089844
557.030457
2355.2771
124.854164
2958.439697
181.350723
5
1.181600192
0.240741965
5369.581543
656.145813
5231.999512
578.135925
2753.514893
84
3830.293701
184.97084
6
1.138429182
0.187044549
6754.569336
878.6875
6338.506836
689.199646
3403.710205
197.416672
4339.410645
268.220428
7
2.055754128
1.039667726
6278.255371
780.0625
5066.379883
702.612427
5540.996582
123.291664
6044.774414
215.85939
8
1.743798219
0.80223311
7588.32373
680.708313
7794.619141
572.74054
5937.833496
164.208328
7054.810547
341.957489
9
2.042504867
1.030339516
4998.791992
515.041687
4450.37207
501.524567
4448.138184
58.5
5015.066406
113.581917
10
1.649396948
0.721938643
5962.645508
726.354187
5281.766113
692.512695
4280.053711
140.3125
4816.63916
380.45047
11
1.559000345
0.640621248
5273.899902
649.354187
4765.275879
584.551331
3615.727539
160
3917.25293
305.774567
12
1.576812963
0.657011542
4880.40625
553.666687
4235.692871
464.694885
3466.422607
196.291672
3992.135742
451.493683
13
1.643997651
0.717208238
12200.38379
591.6875
11892.26367
528.181335
9292.09375
144.458328
9997.699219
248.26796
14
1.783078139
0.834369927
11695.05566
594.020813
12199.63965
717.928833
9755.324219
267.6875
10695.94531
622.085144
15
1.710958522
0.774804786
9876.362305
586.291687
9852.09375
625.685486
7729.87793
111.145836
8661.025391
226.515884
16
2.153596815
1.106748182
16843.40625
656.541687
17229.78711
595.607056
16836.11719
127.083336
18543.22461
226.421173
17
2.1824322
1.125936835
15216.64453
770.875
16820.72656
626.278748
15294.91211
183.479172
18134.24219
375.318878
18
2.227266669
1.155274301
13225.36133
691.666687
16183.81445
617.898254
13530.93164
150.333328
17413.28906
220.86853
19
1.81626794
0.860977048
38468.15234
599.229187
22584.64648
549.482483
33144.53906
176.958328
23495.11328
279.580688
20
1.824878143
0.86780013
35585.85156
707.208313
25691.85742
754.705994
30959.40039
451.125
26022.01758
1615.06543
5736 655 Kbytes .Supplementary data files not provided
