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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Sep 15, 2011 |
| Title |
CHOP2961 |
| Sample type |
genomic |
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| Source name |
Tumor DNA
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| Organism |
Homo sapiens |
| Characteristics |
stage: 5
risk: 3
mycn: 2
age: 988
shimada: 2
sex: 1
ploidy: 2
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA was extracted with Qiagen DNA extraction kit protocol
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| Label |
C-Bio and A-DNP
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| Label protocol |
Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
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| Hybridization protocol |
Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
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| Scan protocol |
Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
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| Description |
A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
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| Data processing |
Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
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| Submission date |
Dec 08, 2009 |
| Last update date |
Sep 15, 2011 |
| Contact name |
Jayanti Jagannathan |
| E-mail(s) |
[email protected]
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| Phone |
2674262286
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| Organization name |
Childrens Hospital of Philadelphia
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| Department |
Oncology
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| Street address |
34th & Civic center blvd
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| City |
Philadelphia |
| State/province |
PA |
| ZIP/Postal code |
19104 |
| Country |
USA |
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| Platform ID |
GPL8887 |
| Series (1) |
| GSE19385 |
Genotyping in Neuroblastoma Primary tumors |
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| Data table header descriptions |
| ID_REF |
|
| VALUE |
LRR = Log R ratio |
| Data table |
| ID_REF |
VALUE |
| rs12354060 |
-0.0262291 |
| rs2691310 |
0.0503027 |
| rs2531266 |
0.0362205 |
| rs4124251 |
0.2552365 |
| rs8179466 |
0.1353947 |
| rs6603779 |
0.0005217 |
| cnvi0007379 |
-0.0042774 |
| cnvi0019140 |
0.222112 |
| cnvi0007389 |
-0.3873546 |
| cnvi0021559 |
0.1027698 |
| cnvi0007392 |
0.0997566 |
| cnvi0007380 |
0.0045227 |
| cnvi0021553 |
0.1447536 |
| cnvi0007381 |
-0.04808 |
| cnvi0019138 |
-0.072501 |
| cnvi0021554 |
-0.1310351 |
| cnvi0019139 |
0.0712438 |
| cnvi0023337 |
-0.0008028 |
| cnvi0007382 |
0.0363745 |
| cnvi0007383 |
0.057016 |
Total number of rows: 620901
Table truncated, full table size 12430 Kbytes.
| Supplementary data files not provided |
| Processed data included within Sample table |
| Processed data are available on Series record |
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