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Sample GSM481045 Query DataSets for GSM481045
Status Public on Sep 15, 2011
Title CHOP2951
Sample type genomic
 
Source name Tumor DNA
Organism Homo sapiens
Characteristics stage: 5
risk: 3
mycn: 1
age: 797
shimada: 2
sex: 1
ploidy: 1
Extracted molecule genomic DNA
Extraction protocol DNA was extracted with Qiagen DNA extraction kit protocol
Label C-Bio and A-DNP
Label protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Hybridization protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Scan protocol Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
Description A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
Data processing Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
 
Submission date Dec 08, 2009
Last update date Sep 15, 2011
Contact name Jayanti Jagannathan
E-mail(s) [email protected]
Phone 2674262286
Organization name Childrens Hospital of Philadelphia
Department Oncology
Street address 34th & Civic center blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL8887
Series (1)
GSE19385 Genotyping in Neuroblastoma Primary tumors

Data table header descriptions
ID_REF
VALUE LRR = Log R ratio

Data table
ID_REF VALUE
rs12354060 -0.1808429
rs2691310 -0.0752271
rs2531266 0.0161668
rs4124251 -0.0753625
rs8179466 -0.194762
rs6603779 0.0285292
cnvi0007379 -0.0844944
cnvi0019140 0.1118654
cnvi0007389 -0.2575202
cnvi0021559 -0.0767624
cnvi0007392 0.0720098
cnvi0007380 0.0048025
cnvi0021553 0.1516396
cnvi0007381 -0.0015198
cnvi0019138 -0.1494484
cnvi0021554 -0.0486984
cnvi0019139 0.0611358
cnvi0023337 -0.098399
cnvi0007382 -0.1722117
cnvi0007383 0.0290065

Total number of rows: 620901

Table truncated, full table size 12461 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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