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Status |
Public on Sep 15, 2011 |
Title |
CHOP2951 |
Sample type |
genomic |
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Source name |
Tumor DNA
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Organism |
Homo sapiens |
Characteristics |
stage: 5 risk: 3 mycn: 1 age: 797 shimada: 2 sex: 1 ploidy: 1
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Extracted molecule |
genomic DNA |
Extraction protocol |
DNA was extracted with Qiagen DNA extraction kit protocol
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Label |
C-Bio and A-DNP
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Label protocol |
Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
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Hybridization protocol |
Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
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Scan protocol |
Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
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Description |
A key to the clinical annotation codes exists as a supplementary file linked to GSE19385.
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Data processing |
Standard Illumina HumanHap chips Quad610, 550 v1,v3 v3duo protocols
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Submission date |
Dec 08, 2009 |
Last update date |
Sep 15, 2011 |
Contact name |
Jayanti Jagannathan |
E-mail(s) |
[email protected]
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Phone |
2674262286
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Organization name |
Childrens Hospital of Philadelphia
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Department |
Oncology
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Street address |
34th & Civic center blvd
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City |
Philadelphia |
State/province |
PA |
ZIP/Postal code |
19104 |
Country |
USA |
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Platform ID |
GPL8887 |
Series (1) |
GSE19385 |
Genotyping in Neuroblastoma Primary tumors |
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Data table header descriptions |
ID_REF |
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VALUE |
LRR = Log R ratio |
Data table |
ID_REF |
VALUE |
rs12354060 |
-0.1808429 |
rs2691310 |
-0.0752271 |
rs2531266 |
0.0161668 |
rs4124251 |
-0.0753625 |
rs8179466 |
-0.194762 |
rs6603779 |
0.0285292 |
cnvi0007379 |
-0.0844944 |
cnvi0019140 |
0.1118654 |
cnvi0007389 |
-0.2575202 |
cnvi0021559 |
-0.0767624 |
cnvi0007392 |
0.0720098 |
cnvi0007380 |
0.0048025 |
cnvi0021553 |
0.1516396 |
cnvi0007381 |
-0.0015198 |
cnvi0019138 |
-0.1494484 |
cnvi0021554 |
-0.0486984 |
cnvi0019139 |
0.0611358 |
cnvi0023337 |
-0.098399 |
cnvi0007382 |
-0.1722117 |
cnvi0007383 |
0.0290065 |
Total number of rows: 620901
Table truncated, full table size 12461 Kbytes.
Supplementary data files not provided |
Processed data included within Sample table |
Processed data are available on Series record |
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