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Sample GSM476603 Query DataSets for GSM476603
Status Public on Dec 07, 2009
Title Liver_thiamine-treated_51week_rep2
Sample type RNA
 
Source name liver, thiamine-treated, 51week
Organism Rattus norvegicus
Characteristics strain: Otsuka Long-Evans Tokushima Fatty (OLETF) rats
gender: male
age: 55 weeks
tissue: liver
intervention: 0.2% thiamine containing water free access for 51 weeks
Treatment protocol The animal protocols were approved by the Institutional Animal Care and Use Committee of Osaka University of Pharmaceutical Sciences. Otsuka Long-Evans Tokushima Fatty (OLETF) male rats at 4 weeks of age were kindly supplied by the Tokushima Research Institute, Otsuka Pharmaceutical (Tokushima, Japan). OLETF rats were randomly divided into 2 groups of 8 each: untreated control and thiamine-treated animals. The latter group received 2 g thiamine/L in their drinking water. Rats were housed in standard cages (2 rats per cage) with free access to water and standard chow, unless noted otherwise. Cages were kept in temperature-controlled animal quarters (21°C) with a 0600-1800 light: 1800-0600 dark cycle, which was maintained throughout the experimental period. All animals were provided standard rodent chow (NMF, Oriental Yeast Co., Tokyo, Japan). Cages were changed at the beginning of each week and body weights were measured between 0800 and 1000. Body weight, food, and water intake were measured weekly throughout the investigation.
The control and treated rats were sacrificed at 55 weeks of age (thiamine treatments for 51 weeks; n = 8 per group). After 16 h of fasting, a rat was anesthetized with pentobarbital (50 mg/Kg), and an indwelling catheter was inserted in the right carotid artery. From exsanguinated animals, samples of liver were removed, and rinsed in ice-cold saline. Parts of liver were placed in RNAlater® (Ambion, Austin, TX) and stored at -80ºC, until further analysis. Individual samples were run on separate microarrays (n = 2, for both thiamine-treated and control groups); no samples were pooled.
Extracted molecule total RNA
Extraction protocol QIAGEN RNeasy mini kit was used.
Label Cy5
Label protocol We followed manufacturer's protocol.
http://www.appliedmicroarrays.com/pdf/codelink_bioarray_processing_protocol.pdf
 
Hybridization protocol We followed manufacturer's protocol.
http://www.appliedmicroarrays.com/pdf/codelink_bioarray_processing_protocol.pdf
Scan protocol We followed manufacturer's protocol, and used GenePix 4000B.
http://www.appliedmicroarrays.com/pdf/codelink_bioarray_processing_protocol.pdf
Description We followed manufacturer's protocol.
Data processing CodeLink Expression Analysis v5.0 software, Quantile normalization
 
Submission date Dec 01, 2009
Last update date Jun 04, 2010
Contact name Takao Tanaka
E-mail(s) [email protected]
Organization name Osaka University of Pharmaceutical Sciences
Street address 4-20-1 Nasahara
City Takatsuki
State/province Osaka
ZIP/Postal code 569-1094
Country Japan
 
Platform ID GPL2896
Series (1)
GSE19292 Thiamine supplementation prevents obesity and obesity-associated metabolic disorders in OLETF rats.

Data table header descriptions
ID_REF
VALUE Per Array Normalized intensity (Quantile)
Per Gene Normalized intensity Per Gene Normalized intensity (Median centering)
Quality Flag Quality flag

Data table
ID_REF VALUE Per Gene Normalized intensity Quality Flag
1001 11647.44288 -0.04445 G
1002 187.8904 0.21378 G
1004 400.27365 0.09406 G
1005 4319.8954 -0.20505 G
1006 2113.0956 -0.39009 G
1007 10352.45238 -0.14551 G
1008 11157.6631 -0.11662 G
1009 763.79578 -0.06517 G
1010 122.47817 0.76612 G
1011 229.32252 0.06513 G
1012 446.2974 -0.24079 G
1013 2403.50885 -0.04154 G
1014 10972.2224 -0.01085 G
1015 10107.094 -0.12168 G
1016 145.75932 0.13933 G
1017 61.3642 -0.34602 L
1018 162.52195 -0.1374 G
1019 15.82475 -0.5652 L
1020 2489.0979 -0.19264 G
1021 11020.21485 -0.07817 G

Total number of rows: 35129

Table truncated, full table size 907 Kbytes.




Supplementary file Size Download File type/resource
GSM476603.TXT.gz 940.3 Kb (ftp)(http) TXT
Processed data included within Sample table

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