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Status
Public on Sep 10, 2010
Title
LUC2T_3
Sample type
RNA
Source name
pr1 promoter::luciferase - MeJA
Organism
Arabidopsis thaliana Characteristics
ecotype: Col-0
Treatment protocol
Name:MeJA - hormone treatment,biotic stress - compound addition,methyl jasmonate:quantity 50uM time 10hour . Addition of 50uM MeJA to the plate and 10 hour incubation.
Growth protocol
whole plant - MS plates, 22ºC, long day conditions (16 hours light/8 hours dark)
Extracted molecule
total RNA
Extraction protocol
LUC2T_3:10ug.
Label
Biotin
Label protocol
labelling Biotin direct, amplification=yes, cRNA 20 ug.
Hybridization protocol
labelled extract quantity: 15ug
Scan protocol
GCOS, Biotin:pmt voltage 570nm,650V,laser power 1
Description
arabidopsis thaliana (col-0) mutant (pr1 promoter: : luciferase) - age:10day
Data processing
The data were normalized with the gcrma algorithm (Irizarry et al., 2003), available in the Bioconductor package (Gentleman and Carey, 2002).
Submission date
Oct 21, 2009
Last update date
Jul 28, 2010
Contact name
sandrine balzergue
Organization name
INRA
Lab
IRHS
Street address
Rue G. Morel
City
Beaucouze
ZIP/Postal code
49000
Country
France
Platform ID
GPL198 Series (1)
GSE18667 Study of the effect of C2 on the transcriptome and the response to MeJA
Data table header descriptions ID_REF ID number
VALUE Normalized data by GCRMA
Data table ID_REF VALUE 244901_at
3.165909405
244902_at
3.106044142
244903_at
4.437650234
244904_at
3.634702565
244905_at
2.340536163
244906_at
4.189063723
244907_at
2.468939694
244908_at
2.310031489
244909_at
2.253562714
244910_s_at
2.36432446
244911_at
2.634188762
244912_at
2.922990509
244913_at
2.039408498
244914_at
2.635594189
244915_s_at
2.20067608
244916_at
2.156697534
244917_at
2.194822704
244918_at
2.304530861
244919_at
2.284237147
244920_s_at
3.435500125
22810 490 Kbytes .Supplementary file Size Download File type/resource GSM463701.CEL.gz
1.8 Mb
(ftp) (http) CEL
Processed data included within Sample table
