|
| Status |
Public on Jun 30, 2022 |
| Title |
FS71_WT-D1 |
| Sample type |
SRA |
| |
|
| Source name |
Huh7 cell clone containing WT A1CF inducible expression construct induced with doxycycline
|
| Organism |
Homo sapiens |
| Characteristics |
cell line: Huh7 hepatoma cells
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Ilumina TruSeq Stranded Total RNA with Ribo-Zero Globin
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
NextSeq 550 |
| |
|
| Data processing |
Base calling: RTA-2.4.11
FASTQ generation: bcl2fastq-2.9.1
RNA-Seq Alignment (BaseSpace Workflow) 1.1.0
Cufflinks Assembly & DE (BaseSpace Workflow) 2.1.0
Isis (Analysis Software) 2.6.25.18
STAR (Aligner) STAR_2.5.0b
Cufflinks 2.2.1
Genome_build: UCSC hg19
Supplementary_files_format_and_content: tab-delimited gene-level differential expression output from Cuffdiff
|
| |
|
| Submission date |
Jun 19, 2020 |
| Last update date |
Jun 30, 2022 |
| Contact name |
Yu-Xin Xu |
| E-mail(s) |
[email protected]
|
| Phone |
6469198320
|
| Organization name |
Massachusetts General Hospital
|
| Department |
Center for Genomic Medicine
|
| Street address |
185 Cambridge Street Simches Research Building, CPZN 5.500
|
| City |
Boston |
| State/province |
United States |
| ZIP/Postal code |
02114 |
| Country |
USA |
| |
|
| Platform ID |
GPL21697 |
| Series (1) |
| GSE152807 |
Interactomics Analyses of Wild-type and Mutant A1CF Reveal Diverged Functions in Regulating Cellular Lipid Metabolism |
|
| Relations |
| BioSample |
SAMN15325040 |
| SRA |
SRX8581826 |
