|
| Status |
Public on Apr 07, 2021 |
| Title |
200863770100_R04C01 Sample220 |
| Sample type |
genomic |
| |
|
| Source name |
Whole Blood
|
| Organism |
Homo sapiens |
| Characteristics |
phenotype: Case
Sex: Female
age: 21
|
| Treatment protocol |
NA
|
| Growth protocol |
NA
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA was extracted using a phenol/chloroform method
|
| Label |
hapten-labeled dideoxynucleotides
|
| Label protocol |
500 ng DNA from each sample was sodium bisulfite-treated using the EZ-96 DNA Methylation-Gol Kit (Zymo Research) according to the manufacturer’s standard protocol.
|
| |
|
| Hybridization protocol |
Samples were processed according to the Illumina Infinium HumanMethylationEPIC BeadChip (Illumina) protocol.
|
| Scan protocol |
Samples were assessed using the Illumina Infinium HumanMethylationEPIC BeadChip (Illumina) using a Illumina iScan System (Illumina).
|
| Description |
Sample220
|
| Data processing |
Data was imported using the R package methylumi methylumIDAT function. Data was then pre-processed in the R package wateRmelon using the pfilter and dasen functions.
|
| |
|
| Submission date |
Jun 08, 2020 |
| Last update date |
Apr 07, 2021 |
| Contact name |
Jonathan Mill |
| Organization name |
University of Exeter
|
| Department |
Medical School
|
| Street address |
RILD Building, RD&E Hospital
|
| City |
Exeter |
| ZIP/Postal code |
EX2 5DW |
| Country |
United Kingdom |
| |
|
| Platform ID |
GPL21145 |
| Series (1) |
| GSE152026 |
Blood DNA methylation profiles from first episode psychosis patients and controls I |
|
