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Sample GSM45717 Query DataSets for GSM45717
Status Public on Mar 22, 2006
Title ROS4
Sample type RNA
 
Source name liver
Organism Mus musculus
Extracted molecule total RNA
 
Description Mice and diets. One-month-old male mice of the long-lived B6C3F1 strain were purchased from Harlan (Indianapolis, IN) and maintained as described after weaning (15). Mice were housed in groups of 4 per cage and fed a non-purified diet, PMI Nutrition International Product #5001 (Purina Mills, Richmond, IN). At 5 months of age, the mice were individually housed, and randomly assigned to one of two groups, control (CON) or long-term CR (LTCR). CON mice were fed 93 kcal per week of a defined control diet (AIN-93M, Diet No. F05312, BIO-SERV). LTCR mice were fed 52.2 kcal per week of a defined CR diet (AIN-93M 40% Restricted, Diet No. F05314, BIO-SERV). The LTCR mice consumed approximately 40% fewer calories than mice in the CON mice. The CR diet was enriched so that the CR mice consumed approximately the same amount of protein, vitamins, and minerals per gram body weight as the control mice. Experimental design. At 20 months of age, cohorts of mice in the CON group were randomly assigned to one of 7 experimental groups (Fig. 1). A CON group continued to be fed 93 kcal per week of control diet for 8 weeks. A CR8 group was fed 77 kcal per week of CR diet for 2 weeks, followed by 52.2 kcal per week of CR diet for 6 weeks. The remaining dietary groups were fed the control diets containing, respectively, metformin (MET; Sigma, St. Louis, MO), glipizide (GLIP; Sigma), GLIP plus MET (GM), rosiglitazone (ROS; Avandia, SmithKline Beecham) or soy isoflavone extract (SOY; NOVASOY 400, Life Extension Foundation) for 8 weeks at the dosages indicated in Table 1. The drugs were mixed with powdered control diet and cold-pressed into one gram pellets (BIO-SERV Inc.). At 0900, all mice were fed 2/7 of the weekly allotment of food on Monday and Wednesday and 3/7 on Friday. The mice had free access to acidified tap water. They were fasted for 48 hours and killed by cervical dislocation at 22 months of age. No signs of pathology were detected in the animals used for the studies reported (n=4 per group). Organs were removed rapidly, flash frozen, and stored in liquid nitrogen. The weights of the mice were monitored bi-weekly. Mouse weights are given in Table 1.
Keywords = CR mimetics
Keywords = microarray profiling
Keywords = drug discovery
Keywords = gene-expression biomarkers
 
Submission date Mar 22, 2005
Last update date May 29, 2005
Contact name Stephen R. Spindler
E-mail(s) [email protected]
Phone 909-787-3597
Fax 909-787-4434
URL http://www.biochemistry.ucr.edu/faculty/spindler.html
Organization name University of California, Riverside
Department Biochemistry
Street address
City Riverside
State/province CA
ZIP/Postal code 92521
Country USA
 
Platform ID GPL81
Series (1)
GSE2431 microarray profiling of potential calorie restriction mimetics

Data table header descriptions
ID_REF
Stat Pairs
Stat Pairs Used
VALUE
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF Stat Pairs Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 20 20 10.1 A 0.9273
AFFX-MurIL10_at 20 20 72.7 A 0.382599
AFFX-MurIL4_at 20 20 8.2 A 0.737173
AFFX-MurFAS_at 20 20 161.6 P 0.001593
AFFX-BioB-5_at 20 20 519.2 P 0.002867
AFFX-BioB-M_at 20 20 1217.5 P 0.000972
AFFX-BioB-3_at 20 20 411.5 P 0.000147
AFFX-BioC-5_at 20 20 1577.7 P 0.000095
AFFX-BioC-3_at 20 20 1103.8 P 0.00006
AFFX-BioDn-5_at 20 20 1218.5 P 0.000095
AFFX-BioDn-3_at 20 20 6576.1 P 0.00011
AFFX-CreX-5_at 20 20 12384.3 P 0.000044
AFFX-CreX-3_at 20 20 18833.7 P 0.000044
AFFX-BioB-5_st 20 20 32.5 A 0.470241
AFFX-BioB-M_st 20 20 119.4 A 0.58862
AFFX-BioB-3_st 20 20 88 A 0.617401
AFFX-BioC-5_st 20 20 31.1 A 0.824672
AFFX-BioC-3_st 20 20 9.3 A 0.843268
AFFX-BioDn-5_st 20 20 391.4 A 0.095667
AFFX-BioDn-3_st 20 20 300.6 P 0.033677

Total number of rows: 12488

Table truncated, full table size 393 Kbytes.




Supplementary data files not provided

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