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Sample GSM4557545 Query DataSets for GSM4557545
Status Public on Dec 22, 2021
Title AW204_STM232
Sample type RNA
 
Source name AW204_STM232
Organism Homo sapiens
Characteristics fibrosis stage: 0
pls risk prediction: Intermediate
Treatment protocol FFPE tissue sections (10 micron-thick) sliced from FFPE blocks
Growth protocol na
Extracted molecule total RNA
Extraction protocol RNA was isolated using High Pure RNA Paraffin kit (Roche) according to manufacturer’s protocol.
Label biotin
Label protocol Refer to the NanoString nCounter Assay System Manual
 
Hybridization protocol Refer to the NanoString nCounter Assay System Manual
Scan protocol Refer to the NanoString nCounter Assay System Manual
Data processing For each probe, transcript count data were log2 transformed and scaled by geometric mean of the normalization genes by NanoString normalizer module of GenePattern toolkit (www.broadinstitute.org/genepattern) after setting a floor value of 1.1.
 
Submission date Aug 05, 2021
Last update date Dec 22, 2021
Contact name Yujin Hoshida
Organization name University of Texas Southwestern Medical Center
Street address 5323 Harry Hines Blvd
City Dallas
State/province TX
ZIP/Postal code 75390
Country USA
 
Platform ID GPL19886
Series (2)
GSE85550 Molecular signature predictive of long-term liver fibrosis progression to inform anti-fibrotic drug development
GSE150734 Prognostic Liver Signature profiles in biopsy tissues from non-alcoholic fatty liver disease (NAFLD) patients in the U.S.

Data table header descriptions
ID_REF
VALUE Normalized transcript abundance

Data table
ID_REF VALUE
FSHB 0.24443
SH3GL2 0.4727922
RBM34 0.6862472
NCAPH 0.3389884
EGF 0.3782337
TRIO 0.8207181
COL6A3 0.8131943
ABLIM1 0.8281639
ITGA9 0.7616949
NTS 0.3782337
SERPINB2 0.4391158
MMP7 0.551549
PRKG2 0.2195579
EDG4 0.3141163
NOS2A 0.3865041
EPHA4 0.4391158
SP100 0.8309703
FMO1 0.6044475
GPX2 0.947042
ATP4B 0.2997431

Total number of rows: 192

Table truncated, full table size 2 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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