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Sample GSM4557384 Query DataSets for GSM4557384
Status Public on Dec 22, 2021
Title AW27_WCA201
Sample type RNA
 
Source name AW27_WCA201
Organism Homo sapiens
Characteristics fibrosis stage: 0
pls risk prediction: High
Treatment protocol FFPE tissue sections (10 micron-thick) sliced from FFPE blocks
Growth protocol na
Extracted molecule total RNA
Extraction protocol RNA was isolated using High Pure RNA Paraffin kit (Roche) according to manufacturer’s protocol.
Label biotin
Label protocol Refer to the NanoString nCounter Assay System Manual
 
Hybridization protocol Refer to the NanoString nCounter Assay System Manual
Scan protocol Refer to the NanoString nCounter Assay System Manual
Data processing For each probe, transcript count data were log2 transformed and scaled by geometric mean of the normalization genes by NanoString normalizer module of GenePattern toolkit (www.broadinstitute.org/genepattern) after setting a floor value of 1.1.
 
Submission date Aug 05, 2021
Last update date Dec 22, 2021
Contact name Yujin Hoshida
Organization name University of Texas Southwestern Medical Center
Street address 5323 Harry Hines Blvd
City Dallas
State/province TX
ZIP/Postal code 75390
Country USA
 
Platform ID GPL19886
Series (2)
GSE85550 Molecular signature predictive of long-term liver fibrosis progression to inform anti-fibrotic drug development
GSE150734 Prognostic Liver Signature profiles in biopsy tissues from non-alcoholic fatty liver disease (NAFLD) patients in the U.S.

Data table header descriptions
ID_REF
VALUE Normalized transcript abundance

Data table
ID_REF VALUE
FSHB 0.3522572
SH3GL2 0.4624474
RBM34 0.6035115
NCAPH 0.3522572
EGF 0.3017557
TRIO 0.82111
COL6A3 0.7497919
ABLIM1 0.8481625
ITGA9 0.7432082
NTS 0.28558
SERPINB2 0.3293148
MMP7 0.4576282
PRKG2 0.1903867
EDG4 0.28558
NOS2A 0.3890992
EPHA4 0.4114188
SP100 0.8580747
FMO1 0.3017557
GPX2 0.6926386
ATP4B 0.2460712

Total number of rows: 192

Table truncated, full table size 2 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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