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Sample GSM4557382 Query DataSets for GSM4557382
Status Public on Dec 22, 2021
Title AW25_WCA395
Sample type RNA
 
Source name AW25_WCA395
Organism Homo sapiens
Characteristics fibrosis stage: 1
pls risk prediction: Intermediate
Treatment protocol FFPE tissue sections (10 micron-thick) sliced from FFPE blocks
Growth protocol na
Extracted molecule total RNA
Extraction protocol RNA was isolated using High Pure RNA Paraffin kit (Roche) according to manufacturer’s protocol.
Label biotin
Label protocol Refer to the NanoString nCounter Assay System Manual
 
Hybridization protocol Refer to the NanoString nCounter Assay System Manual
Scan protocol Refer to the NanoString nCounter Assay System Manual
Data processing For each probe, transcript count data were log2 transformed and scaled by geometric mean of the normalization genes by NanoString normalizer module of GenePattern toolkit (www.broadinstitute.org/genepattern) after setting a floor value of 1.1.
 
Submission date Aug 05, 2021
Last update date Dec 22, 2021
Contact name Yujin Hoshida
Organization name University of Texas Southwestern Medical Center
Street address 5323 Harry Hines Blvd
City Dallas
State/province TX
ZIP/Postal code 75390
Country USA
 
Platform ID GPL19886
Series (2)
GSE85550 Molecular signature predictive of long-term liver fibrosis progression to inform anti-fibrotic drug development
GSE150734 Prognostic Liver Signature profiles in biopsy tissues from non-alcoholic fatty liver disease (NAFLD) patients in the U.S.

Data table header descriptions
ID_REF
VALUE Normalized transcript abundance

Data table
ID_REF VALUE
FSHB 0.32390827
SH3GL2 0.49503576
RBM34 0.51904734
NCAPH 0.32390827
EGF 0.32390827
TRIO 0.93825408
COL6A3 0.6938401
ABLIM1 0.92569175
ITGA9 0.8853139
NTS 0.4318777
SERPINB2 0.01484618
MMP7 0.52979415
PRKG2 0.25069724
EDG4 0.30310849
NOS2A 0.42182473
EPHA4 0.50139448
SP100 0.89256018
FMO1 0.32390827
GPX2 0.7972143
ATP4B 0.30310849

Total number of rows: 192

Table truncated, full table size 3 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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