|
| Status |
Public on May 21, 2021 |
| Title |
SC-3: small cell MALT lymphoma 3 |
| Sample type |
genomic |
| |
|
| Source name |
gastric resection
|
| Organism |
Homo sapiens |
| Characteristics |
gender,age, tissue type: F, 80, cryopreserved
gender: F
age: 80
tissue: small cell MALT lymphoma
tissue type: cryopreserved
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
A tumor cell content of at least 70% was ensured based on morphologic inspection in every sample analyzed herein. Extraction of DNA from FFPE tissue was performed using the truXTRAC FFPE DNA micro Tube Kit (Covaris, USA) . DNA extraction from cryo-preserved material was performed using the QIAamp DNA Mini Kit (Qiagen, Germany).
|
| Label |
Cy3 and Cy5
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium MethylationEPIC BeadChip
|
| Scan protocol |
Arrays were imaged using iScan using standard recommended Illumina scanner setting
|
| Data processing |
GenomeStudio software (v2011.1; methylation module 1.9.0)
GenomeStudio software (v2011.1; methylation module 1.9.0) normalized avg. beta values. For data normalization, the intrinsic controls present on the array were used.
|
| |
|
| Submission date |
May 12, 2020 |
| Last update date |
May 21, 2021 |
| Contact name |
Thomas FE Barth |
| E-mail(s) |
[email protected]
|
| Organization name |
Ulm University
|
| Department |
Pathology
|
| Street address |
Albert-Einstein-Allee 11
|
| City |
Ulm |
| State/province |
Select... |
| ZIP/Postal code |
89081 |
| Country |
Germany |
| |
|
| Platform ID |
GPL21145 |
| Series (1) |
| GSE150417 |
Genome-wide DNA Methylation Analysis along the Progression of Gastric Marginal Zone B-cell Lymphoma of MALT Type |
|
