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GEO accession:
Sample GSM44605
Query DataSets for GSM44605
Status
Public on May 02, 2005
Title
Rice red light 3
Sample type
RNA
Channel 1
Source name
ten-day rice seedlings under continuous red light
Organism
Oryza sativa
Extracted molecule
total RNA
Channel 2
Source name
ten-day rice seedlings in dark
Organism
Oryza sativa
Extracted molecule
total RNA
Description
Rice seedling photomorphogenesis, whole seedlings, red light vs. dark.
Keywords = rice
Keywords = photomorphogenesis
Submission date
Mar 03, 2005
Last update date
May 27, 2005
Contact name
Yuling Jiao
Organization name
California Institute of Technology
Department
Biology
Lab
Meyerowitz
Street address
1200 E California Blvd
City
Pasadena
State/province
CA
ZIP/Postal code
91125
Country
USA
Platform ID
GPL1829
Series (1)
GSE2360
Comparison analysis of rice and Arabidopsis photomorphogenesis
Data table header descriptions
ID_REF
VALUE
Log (base 2) transform of the ratio of the normalized medians (Light vs. Dark).
CY5_SIG_MEDIAN
Normalized median feature pixel intensity at wavelength 635 nm.
CY5_BKG_MEDIAN
Corrected median feature background intensity at wavelength 635 nm.
CY3_SIG_MEDIAN
Normalized median feature pixel intensity at wavelength 532 nm.
CY3_BKG_MEDIAN
Corrected median feature background intensity at wavelength 532 nm.
FLAG
The type of flag associated with a feature. An extension of GenePix 3.0 flags described at http://www.axon.com/gn_GPR_Format_History.html
Data table
ID_REF
VALUE
CY5_SIG_MEDIAN
CY5_BKG_MEDIAN
CY3_SIG_MEDIAN
CY3_BKG_MEDIAN
FLAG
Os013571_01
0.0818430776960611
555.1726
135
525.0000
128
0
Os011741_01
0.12957566555034
923.1899
141
843.0000
128
0
Os044136_01
-0.0406037504504282
1115.7207
125
1148.0000
129
0
Os042284_01
0.199117085304114
3394.3835
149
2957.0000
130
0
Os055803_01
0.59899942699399
674.1197
197
445.0000
130
0
Os053998_01
0.0000
41
0.0000
131
-50
Os025940_01
0.0000
41
0.0000
131
-50
Os024128_01
-0.275874251190136
466.6362
109
564.0000
131
0
Os022614_01
-0.0962476883264051
2741.3606
123
2931.0000
132
0
Os051048_01
0.0000
41
0.0000
132
-50
Os049480_01
0.0000
41
0.0000
132
-50
Os021174_01
-0.343188115470924
465.0402
104
590.0000
132
0
Os019611_01
0.0000
41
0.0000
133
-50
Os048310_01
-1.23805537892352
184.0310
56
435.0000
133
0
Os046458_01
-0.17625570232138
545.4535
118
616.0000
133
0
Os018456_01
0.434398439254971
523.2422
180
387.0000
133
0
Os016625_01
-0.165706201012703
800.9914
119
898.0000
133
0
Os015075_01
0.239663303402382
593.6846
158
502.0000
133
0
Os057845_01
0.276730496462015
575.1032
162
474.0000
133
0
Os056919_01
0.0000
43
0.0000
133
-50
Total number of rows:
60727
Table truncated, full table size
3184 Kbytes
.
Supplementary data files not provided
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