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GEO accession:
Sample GSM44593
Query DataSets for GSM44593
Status
Public on May 02, 2005
Title
Arabidopsis Cotyledon 2
Sample type
RNA
Channel 1
Source name
six-day Arabidopsis seedling cotyledons in dark
Organism
Arabidopsis thaliana
Extracted molecule
total RNA
Channel 2
Source name
six-day Arabidopsis seedling cotyledons under continuous white light
Organism
Arabidopsis thaliana
Extracted molecule
total RNA
Description
Arabidopsis seedling photomorphogenesis, cotyledons, white light vs. dark.
Keywords = Arabidopsis
Keywords = photomorphogenesis
Submission date
Mar 03, 2005
Last update date
May 27, 2005
Contact name
Yuling Jiao
Organization name
California Institute of Technology
Department
Biology
Lab
Meyerowitz
Street address
1200 E California Blvd
City
Pasadena
State/province
CA
ZIP/Postal code
91125
Country
USA
Platform ID
GPL1077
Series (1)
GSE2360
Comparison analysis of rice and Arabidopsis photomorphogenesis
Data table header descriptions
ID_REF
VALUE
Log (base 2) transform of the ratio of the normalized medians (Light vs. Dark).
CY5_SIG_MEDIAN
Normalized median feature pixel intensity at wavelength 635 nm.
CY5_BKG_MEDIAN
Corrected median feature background intensity at wavelength 635 nm.
CY3_SIG_MEDIAN
Normalized median feature pixel intensity at wavelength 532 nm.
CY3_BKG_MEDIAN
Corrected median feature background intensity at wavelength 532 nm.
FLAG
The type of flag associated with a feature. An extension of GenePix 3.0 flags described at http://www.axon.com/gn_GPR_Format_History.html
Data table
ID_REF
VALUE
CY5_SIG_MEDIAN
CY5_BKG_MEDIAN
CY3_SIG_MEDIAN
CY3_BKG_MEDIAN
FLAG
A020440_01
-0.654386036337568
1439.0000
232
913.8624
147
0
A001043_01
-0.217296075317568
947.0000
232
814.0259
199
0
A000100_01
1.02699206587079
348.0000
230
710.4570
470
0
A000106_01
0.0000
230
0.0000
115
-50
A000124_01
0.110296030919259
574.0000
230
619.3307
248
0
A000130_01
0.0000
230
0.0000
116
-50
A000148_01
0.0000
230
0.0000
116
-50
A000154_01
0.0000
230
0.0000
116
-50
A000172_01
1.53938884601644
364.0000
230
1056.4996
667
0
A000178_01
-0.613500423733775
813.0000
230
531.0540
150
0
A000480_01
0.0000
231
0.0000
116
-50
A000486_01
0.543012931740519
461.0000
231
673.1128
338
0
A000504_01
0.326636167566328
388.0000
232
485.6374
290
0
A000510_01
0.0000
232
0.0000
116
-50
A000528_01
1.00399962391724
382.0000
233
762.8273
464
0
A000534_01
1.4002460442724
867.0000
233
2288.4214
615
0
A000552_01
-2.79503064837273
1287.0000
233
185.8632
34
0
A000558_01
0.0000
234
0.0000
117
-50
A000860_01
0.441274455186501
324.0000
232
438.9179
314
0
A000866_01
0.0000
232
0.0000
114
-50
Total number of rows:
26102
Table truncated, full table size
1296 Kbytes
.
Supplementary data files not provided
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