GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM44443
Query DataSets for GSM44443
Status
Public on Mar 05, 2005
Title
Seedling Shoot 1
Sample type
RNA
Channel 1
Source name
Shoots from seeding stage (Cy5)
Organism
Oryza sativa
Extracted molecule
total RNA
Channel 2
Source name
Cultured Cells (Cy3)
Organism
Oryza sativa
Extracted molecule
total RNA
Description
Seedling Shoot vs. Cultured Cell (control sample)
Keywords = rice
Keywords = shoot
Submission date
Mar 03, 2005
Last update date
May 27, 2005
Contact name
Yuling Jiao
Organization name
California Institute of Technology
Department
Biology
Lab
Meyerowitz
Street address
1200 E California Blvd
City
Pasadena
State/province
CA
ZIP/Postal code
91125
Country
USA
Platform ID
GPL1722
Series (1)
GSE2358
Expression Analysis of Rice Chromosome 4 Using Tiling Microarray
Data table header descriptions
ID_REF
VALUE
Log (base 2) transform of the ratio of the normalized medians.
CY5_MEDIAN
Normalized median feature pixel intensity at wavelength 635 nm with the median background subtracted.
CY3_MEDIAN
Normalized median feature pixel intensity at wavelength 532 nm with the median background subtracted.
FLAG
The type of flag associated with a feature. An extension of GenePix 3.0 flags described at http://www.axon.com/gn_GPR_Format_History.html
Data table
ID_REF
VALUE
CY5_MEDIAN
CY3_MEDIAN
FLAG
8083le04
0.648178831
3633.156536
2318.263723
0
8083nf08
0.908019753
1087.822167
579.7179161
0
8083ba09
2.606448363
2209.376506
362.786061
0
8083fh01
1.250584222
2286.10825
960.8009594
0
8084he03
0.063318699
121.7904988
116.5608166
-50
8084ff07
-0.082714394
2201.765536
2331.688782
0
8084ga02
-0.409296304
962.3440702
1278.029385
-50
8084gc04
0.790009995
499.9878594
289.1630212
0
8034mb04
-0.926410744
1745.839816
3318.041521
0
8034sb06
1.024645666
1320.937039
649.2815134
0
8035fe07
0.070881132
176.8961997
168.4151499
-100
8035gc05
0.397053565
1837.747676
1395.599642
0
8035me09
0.224980999
2247.051004
1922.590983
0
8035lc05
0.605636043
170.0333488
111.7427854
-50
8036da12
-0.419253912
190.1746452
254.3083488
0
8036ia01
0.728687033
1901.042484
1147.189512
0
7018lf08
-0.077917136
255.2888227
269.4555887
0
7018kd08
0.808892563
525.8048676
300.1398612
0
7018hf09
0.307926217
969.0321565
782.7862006
0
7018oc05
0.255324245
818.0997307
685.4029881
0
Total number of rows:
14044
Table truncated, full table size
652 Kbytes
.
Supplementary data files not provided
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
