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Sample GSM42550 Query DataSets for GSM42550
Status Public on Oct 04, 2005
Title Control Colon 2 17 days old
Sample type RNA
 
Source name Colon 17 days old
Organism Rattus norvegicus
Extracted molecule total RNA
 
Description Whole tissues corresponding to the proximal and distal small intestine and to the colon were dissected from each rat, washed with ice-cold saline solution and immediately frozen in liquid nitrogen. Rats were either control or treated with Amoxicillin (100mg/kg/day). Small intestine was divided in two identical length considered as the proximal and distal part. In each intestinal part 1 cm of tissue was taken in the middle of this part to perform the RNA extraction and then the GeneArray analysis.
Keywords = gastrointestinal tract, microarray, antibiotic, suckling rats, amoxicillin
 
Submission date Feb 17, 2005
Last update date Oct 04, 2005
Contact name Alexandra Schumann
E-mail(s) [email protected]
Phone + 41 21 785 93 39
Fax + 41 21 785 85 44
Organization name Nestle Research Center
Department Nutrition and Health
Lab Digestive Health
Street address PO box 44
City Vers-chez-les-Blancs
ZIP/Postal code 1000
Country Switzerland
 
Platform ID GPL341
Series (1)
GSE2354 Effect of Amoxicillin on the small intestine and colon of rats

Data table header descriptions
ID_REF
VALUE MAS5 scaled ADI
LOG log 2 normalized ADI

Data table
ID_REF VALUE LOG
AFFX-BioB-5_at 54.3 5.669463411
AFFX-DapX-5_at 9.7 3.258253608
1398787_at 1331.3 10.47789824
1367863_at 124.7 6.915528643
1374210_at 196.5 7.596457434
1374211_at 25.6 4.612157944
1374212_at 94.1 6.471055429
1389463_at 135.5 7.005918182
1389464_at 109.6 6.680158353
1374213_at 109.8 6.742582944
1374214_at 176 7.407371937
1389465_at 327.7 8.357266466
1374215_at 188.7 7.566254269
1374216_at 150.8 7.19691949
1367864_at 222.7 7.780853719
1389466_at 448.3 8.839697636
1374217_at 87.2 6.394083585
1374218_at 28.1 4.718827085
1389467_at 81.2 6.259307049
1374219_at 14.8 3.821097633

Total number of rows: 15918

Table truncated, full table size 440 Kbytes.




Supplementary data files not provided

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