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Sample GSM42543 Query DataSets for GSM42543
Status Public on Oct 04, 2005
Title Amoxicillin treated Proximal, Small Intestine 2 17 days old
Sample type RNA
 
Source name Proximal, Small Intestine 17 days old
Organism Rattus norvegicus
Extracted molecule total RNA
 
Description Whole tissues corresponding to the proximal and distal small intestine and to the colon were dissected from each rat, washed with ice-cold saline solution and immediately frozen in liquid nitrogen. Rats were either control or treated with Amoxicillin (100mg/kg/day). Small intestine was divided in two identical length considered as the proximal and distal part. In each intestinal part 1 cm of tissue was taken in the middle of this part to perform the RNA extraction and then the GeneArray analysis.
Keywords = gastrointestinal tract, microarray, antibiotic, suckling rats, amoxicillin
 
Submission date Feb 17, 2005
Last update date Oct 04, 2005
Contact name Alexandra Schumann
E-mail(s) [email protected]
Phone + 41 21 785 93 39
Fax + 41 21 785 85 44
Organization name Nestle Research Center
Department Nutrition and Health
Lab Digestive Health
Street address PO box 44
City Vers-chez-les-Blancs
ZIP/Postal code 1000
Country Switzerland
 
Platform ID GPL341
Series (1)
GSE2354 Effect of Amoxicillin on the small intestine and colon of rats

Data table header descriptions
ID_REF
VALUE MAS5 scaled ADI
LOG log 2 normalized ADI

Data table
ID_REF VALUE LOG
AFFX-BioB-5_at 70.4 6.098923115
AFFX-DapX-5_at 18.8 4.069867955
1398787_at 1243.4 10.29583041
1367863_at 111.2 6.782871785
1374210_at 208.9 7.695033279
1374211_at 30.6 4.822410137
1374212_at 73 6.161807266
1389463_at 123.6 6.927089975
1389464_at 4.4 2.083729363
1374213_at 300 8.216034578
1374214_at 144.5 7.159892217
1389465_at 290.1 8.169668771
1374215_at 286.5 8.151766072
1374216_at 140.8 7.124338713
1367864_at 245.4 7.927570469
1389466_at 334.5 8.375689435
1374217_at 332.7 8.363023545
1374218_at 33.7 5.009060114
1389467_at 89.9 6.462997667
1374219_at 9.3 3.104831728

Total number of rows: 15918

Table truncated, full table size 439 Kbytes.




Supplementary data files not provided

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