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Sample GSM42539 Query DataSets for GSM42539
Status Public on Oct 04, 2005
Title Amoxicillin treated Distal, Small Intestine 3 17 days old
Sample type RNA
 
Source name Distal, Small Intestine 17 days old
Organism Rattus norvegicus
Extracted molecule total RNA
 
Description Whole tissues corresponding to the proximal and distal small intestine and to the colon were dissected from each rat, washed with ice-cold saline solution and immediately frozen in liquid nitrogen. Rats were either control or treated with Amoxicillin (100mg/kg/day). Small intestine was divided in two identical length considered as the proximal and distal part. In each intestinal part 1 cm of tissue was taken in the middle of this part to perform the RNA extraction and then the GeneArray analysis.
Keywords = gastrointestinal tract, microarray, antibiotic, suckling rats, amoxicillin
 
Submission date Feb 17, 2005
Last update date Oct 04, 2005
Contact name Alexandra Schumann
E-mail(s) [email protected]
Phone + 41 21 785 93 39
Fax + 41 21 785 85 44
Organization name Nestle Research Center
Department Nutrition and Health
Lab Digestive Health
Street address PO box 44
City Vers-chez-les-Blancs
ZIP/Postal code 1000
Country Switzerland
 
Platform ID GPL341
Series (1)
GSE2354 Effect of Amoxicillin on the small intestine and colon of rats

Data table header descriptions
ID_REF
VALUE MAS5 scaled ADI
LOG log 2 normalized ADI

Data table
ID_REF VALUE LOG
AFFX-BioB-5_at 51.5 5.772860373
AFFX-DapX-5_at 9.4 3.36467872
1398787_at 1649 10.62485889
1367863_at 153 7.283860133
1374210_at 198.3 7.636496611
1374211_at 3.9 2.091697981
1374212_at 52.1 5.77319164
1389463_at 81.6 6.40819
1389464_at 46.1 5.628632556
1374213_at 190.2 7.588280401
1374214_at 130.8 7.062678994
1389465_at 213.2 7.723283935
1374215_at 297.7 8.201096474
1374216_at 224.1 7.827916807
1367864_at 202.1 7.660804979
1389466_at 457.2 8.802856095
1374217_at 255.7 8.029877594
1374218_at 35.8 5.272323661
1389467_at 99.6 6.706567434
1374219_at 28.8 4.976093049

Total number of rows: 15918

Table truncated, full table size 439 Kbytes.




Supplementary data files not provided

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