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Sample GSM42533 Query DataSets for GSM42533
Status Public on Oct 04, 2005
Title Amoxicillin treated Colon 3 21 days old
Sample type RNA
 
Source name Colon 21 days old
Organism Rattus norvegicus
Extracted molecule total RNA
 
Description Whole tissues corresponding to the proximal and distal small intestine and to the colon were dissected from each rat, washed with ice-cold saline solution and immediately frozen in liquid nitrogen. Rats were either control or treated with Amoxicillin (100mg/kg/day). Small intestine was divided in two identical length considered as the proximal and distal part. In each intestinal part 1 cm of tissue was taken in the middle of this part to perform the RNA extraction and then the GeneArray analysis.
Keywords = gastrointestinal tract, microarray, antibiotic, suckling rats, amoxicillin
 
Submission date Feb 17, 2005
Last update date Oct 04, 2005
Contact name Alexandra Schumann
E-mail(s) [email protected]
Phone + 41 21 785 93 39
Fax + 41 21 785 85 44
Organization name Nestle Research Center
Department Nutrition and Health
Lab Digestive Health
Street address PO box 44
City Vers-chez-les-Blancs
ZIP/Postal code 1000
Country Switzerland
 
Platform ID GPL341
Series (1)
GSE2354 Effect of Amoxicillin on the small intestine and colon of rats

Data table header descriptions
ID_REF
VALUE MAS5 scaled ADI
LOG log 2 normalized ADI

Data table
ID_REF VALUE LOG
AFFX-BioB-5_at 72.8 5.999933052
AFFX-DapX-5_at 1.4 0.249989709
1398787_at 1291.2 10.47102781
1367863_at 179.8 7.414750546
1374210_at 201.3 7.622956046
1374211_at 20.8 4.14061916
1374212_at 74.6 6.062673238
1389463_at 124.9 6.828314458
1389464_at 110.1 6.573252234
1374213_at 116.7 6.810962762
1374214_at 165.1 7.281579042
1389465_at 308.6 8.278547796
1374215_at 285.5 8.175014894
1374216_at 145.9 7.126849818
1367864_at 286.7 8.139827593
1389466_at 454.3 8.885297675
1374217_at 26.4 4.636629294
1374218_at 21.7 4.218892064
1389467_at 75.6 6.084497054
1374219_at 22.3 4.2411362

Total number of rows: 15918

Table truncated, full table size 440 Kbytes.




Supplementary data files not provided

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